Non-Coding RNA Search

Spl1-SPL01D070074

Sequence:


               
               CATCGGGAGTCGGCCTGTTGGCCTACTGGACTGATACTGTCCTGCTCCCTCTCCTGGCGA
CTTCCTCACCATCCCAGGAAGATGGGCCACCACCGCTTGCCAGACCCACTCGCCTCATGC
GGTGCCCAAGGAGGGTCATGGTGGCTGAGGATTCGTCCCCTAGACGGCGGGCGGCCCCCA
ACTCTGAGCTTTCAGGGCCATGCCTGAGGCGGTGGCTCCACAGCCGGGTGTGGCCCAGCT
CAGCCCCTTCTACCCAAGCTTGGTAATTGCAGCTCCACCTCTGGCCTGTACCTCCCGTGT
TCACAATGCCGAAAGACGCCGCTTCCCCAGAGGGGGCAGATAGAAGCAGGATAGGGAGGC
AGCCGTCCAAGCCGCTGCCAAGTACATTCCCATGGGTCGAAGTGAAGCCGTAACTTTTTC
TGCTTGGAGCTGCCTGTCAAGGGGAGGGGGAGGTTAAAGCCCTCCCTCCCCTGGCCAGGT
GGTCGGCCTCCTGCTGCAGGGAGGCTGTGGGTGGCGGCAGACCGCTTGATGGATGGGGGA
TGTCGGTGGCACGCGGACACACCTTGGCCCTCTCCCCAGAATGGGCTTACGGCATTTTCC
ATCAGCATTCGTGTCCAAGGAGCAAATTGGATTGTCTGTCGCATGCTTGTTACCATGTGT
ATAATTAATGTAATTTTATATTCACTCAATTACGGTGACACGCCCAACAGGCGGATTACA
CAGGCCACCAGTAATGCCAGTCGTCCGTCTCCCACTGCCAGTCCATGAAACCCACCCCAG
CAGCCTTGCCAGAGCAGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCGGGAGTCGGCCTGTTGGCCTACTGGACTGATACTGTCCTGCTCCCTCTCCTGGCGA
CTTCCTCACCATCCCAGGAAGATGGGCCACCACCGCTTGCCAGACCCACTCGCCTCATGC
GGTGCCCAAGGAGGGTCATGGTGGCTGAGGATTCGTCCCCTAGACGGCGGGCGGCCCCCA
ACTCTGAGCTTTCAGGGCCATGCCTGAGGCGGTGGCTCCACAGCCGGGTGTGGCCCAGCT
CAGCCCCTTCTACCCAAGCTTGGTAATTGCAGCTCCACCTCTGGCCTGTACCTCCCGTGT
TCACAATGCCGAAAGACGCCGCTTCCCCAGAGGGGGCAGATAGAAGCAGGATAGGGAGGC
AGCCGTCCAAGCCGCTGCCAAGTACATTCCCATGGGTCGAAGTGAAGCCGTAACTTTTTC
TGCTTGGAGCTGCCTGTCAAGGGGAGGGGGAGGTTAAAGCCCTCCCTCCCCTGGCCAGGT
GGTCGGCCTCCTGCTGCAGGGAGGCTGTGGGTGGCGGCAGACCGCTTGATGGATGGGGGA
TGTCGGTGGCACGCGGACACACCTTGGCCCTCTCCCCAGAATGGGCTTACGGCATTTTCC
ATCAGCATTCGTGTCCAAGGAGCAAATTGGATTGTCTGTCGCATGCTTGTTACCATGTGT
ATAATTAATGTAATTTTATATTCACTCAATTACGGTGACACGCCCAACAGGCGGATTACA
CAGGCCACCAGTAATGCCAGTCGTCCGTCTCCCACTGCCAGTCCATGAAACCCACCCCAG
CAGCCTTGCCAGAGCAGTGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               145-248, - strand, RNAz p=0.999219
               

               
               399-552, - strand, RNAz p=0.999943

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-248, - strand, RNAz p=0.999219
               

               
               399-552, - strand, RNAz p=0.999943

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               199-264, + strand, RNAmicro p=0.999534

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               199-264, + strand, RNAmicro p=0.999534

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               38-801, gnl|bosTau2|chr3 (60839121-60839891)
               

               
               38-801, gnl|Hg17|chr1 (54443387-54442560)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-801, gnl|bosTau2|chr3 (60839121-60839891)
               

               
               38-801, gnl|Hg17|chr1 (54443387-54442560)

	145-248, - strand, RNAz p=0.999219
	399-552, - strand, RNAz p=0.999943

	38-801, gnl\|bosTau2\|chr3 (60839121-60839891)
	38-801, gnl\|Hg17\|chr1 (54443387-54442560)