Non-Coding RNA Search

Spl1-SPL01D080059

Sequence:


               
               AGGTGTAACAGATGGCCCCGTTTCTGTCCAAGCCAGGGAGACTGGTGCCCATTCCGGCTG
CAGCCAATCAATCCCGCCACTCTGGGGGGAGCTACAAGCTGGGCTGGGAGGCCTGGAGCC
AGCAATCGCGCAAGGCTGTCTGCTCGGGCTGGCCCAGCACTGCCTCCGCCAGCCGCTCAG
CCATGGGCCCTGGGAGGTAGGAGGGCAGGCAAGTGGCAGCCATGCCCGGCAGCCCAGTCA
GAGCAGAGGCCTGTCTGGGAGAGAGAGCCCAGACCCACACATCGGGACCCAAATGGCCAA
TCAAGACAATCAAGTTCCCAACCTGCCCCACTTTGTCCTCTCTCTCCTGTGGTCCCTGCT
TCATACTTAAGCCCCAGGTCCCTAGCCTCAAAACGCCCTAGACCCATAACCCTGCAGTGT
CCTGCATTGTAGACACCAGATGTTGCTTGGGACTGGGGGTGGTTAGTGGTACCTTTGGGA
GAGGTAGTTCACGGAACTGCAGAAGGCTTCAAGAAATGCCCAAGCCAGGGAAGAAAAGAA
AACAGCAGGATCCAGGGGTCCCAGAGCTGGGAGAAATTGTTAATTAATTTGTCCATACGT
TCACATAGTCAGTCAACACTTAGTGAAAGCCTGCTATGTGCCTTTGCTAAGCACTGGGGG
CATGGTGATGAATAGGACAGAATTCCTGTCCTTGAGACCTTCTTGGAGAGAGACAGACAA
GAACATGGGGTAACTGGAGTGATGAGCTTTGGCTCATAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGTAACAGATGGCCCCGTTTCTGTCCAAGCCAGGGAGACTGGTGCCCATTCCGGCTG
CAGCCAATCAATCCCGCCACTCTGGGGGGAGCTACAAGCTGGGCTGGGAGGCCTGGAGCC
AGCAATCGCGCAAGGCTGTCTGCTCGGGCTGGCCCAGCACTGCCTCCGCCAGCCGCTCAG
CCATGGGCCCTGGGAGGTAGGAGGGCAGGCAAGTGGCAGCCATGCCCGGCAGCCCAGTCA
GAGCAGAGGCCTGTCTGGGAGAGAGAGCCCAGACCCACACATCGGGACCCAAATGGCCAA
TCAAGACAATCAAGTTCCCAACCTGCCCCACTTTGTCCTCTCTCTCCTGTGGTCCCTGCT
TCATACTTAAGCCCCAGGTCCCTAGCCTCAAAACGCCCTAGACCCATAACCCTGCAGTGT
CCTGCATTGTAGACACCAGATGTTGCTTGGGACTGGGGGTGGTTAGTGGTACCTTTGGGA
GAGGTAGTTCACGGAACTGCAGAAGGCTTCAAGAAATGCCCAAGCCAGGGAAGAAAAGAA
AACAGCAGGATCCAGGGGTCCCAGAGCTGGGAGAAATTGTTAATTAATTTGTCCATACGT
TCACATAGTCAGTCAACACTTAGTGAAAGCCTGCTATGTGCCTTTGCTAAGCACTGGGGG
CATGGTGATGAATAGGACAGAATTCCTGTCCTTGAGACCTTCTTGGAGAGAGACAGACAA
GAACATGGGGTAACTGGAGTGATGAGCTTTGGCTCATAAAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.905849

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.905849

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               81-204, - strand, RNAmicro p=0.99688
               

               
               82-229, + strand, RNAmicro p=0.994165

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               81-204, - strand, RNAmicro p=0.99688
               

               
               82-229, + strand, RNAmicro p=0.994165

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-761, gnl|bosTau2|chr26 (13609611-13610333)
               

               
               1-761, gnl|Hg17|chr10 (102992166-102992925)
               

               
               1-761, gnl|Mm7|chr19 (45145802-45146766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-761, gnl|bosTau2|chr26 (13609611-13610333)
               

               
               1-761, gnl|Hg17|chr10 (102992166-102992925)
               

               
               1-761, gnl|Mm7|chr19 (45145802-45146766)

	81-204, - strand, RNAmicro p=0.99688
	82-229, + strand, RNAmicro p=0.994165

	1-761, gnl\|bosTau2\|chr26 (13609611-13610333)
	1-761, gnl\|Hg17\|chr10 (102992166-102992925)
	1-761, gnl\|Mm7\|chr19 (45145802-45146766)