Non-Coding RNA Search

Spl1-SPL01D090094

Sequence:


               
               ATTACCAGCACCGCATGCGCCCTGAAATTGCCCGGCTTTTGACCCCTCACATTTACCAGG
ATCTGGAGAACCATCCCTCTGTTCTCAAATACGAGAAGATTAAGGGGGTCTCTTCCAACC
TTTTCTTTGTAGAACATAACTTTCCTGAACAGGAAATCCAAGAAGGCAAAAGCCACCAGA
ACCAGCATGAGGCTCGTTTTGTGGTGGAACTGTGCAAGTACTTCCTGTGCCAGGAGTACC
TGCCGTCCCAGATCACCATCCTCACCACCTACACTGGGCAGCTCTTCTGCCTGCGCAAAC
TCATGCCTGCCAAGACATTTGCTGGTGTCAGGGTCCATGTGGTGGACAAATACCAAGGGG
AGGAGAATGACATCATCCTCCTCTCACTCGTGCGCAGCAACCAGGAAGGCAAGGTGGGTT
TTCTCCAGATACCCAATCGCATCTGTGTGGCCTTGTCCCGCGCCAAGAAGGGGATGTATT
GTGTCGGCAACATGCAGATGTTGGCCAAGGTGCCCTTGTGGAGCAGGATCATCCATACTC
TTCGAGAGAACAATCAAATAGGCTCTGCACTCCGGCTGTGCTGCCAGAACCACCCTGATA
CCCACACCTTGGTATCCAAAGCTTCTGACTTCCAAACAGTGCCCGAAGGAGGCTGTAGCC
TACCCTGTGAGTTCCGGCTGGGCTGTGGGCATGTCTGCACCCGTGCCTGCCACCCCTATG
ACTCCTTGCACAAGGAGTTTCAGTGCATGAAGCCATGCCAGAAGGTGGTCTGCCAGGATG
GGCATCGGTGCCCCCTTGTTTGCTTCCAGGAGTGCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACCAGCACCGCATGCGCCCTGAAATTGCCCGGCTTTTGACCCCTCACATTTACCAGG
ATCTGGAGAACCATCCCTCTGTTCTCAAATACGAGAAGATTAAGGGGGTCTCTTCCAACC
TTTTCTTTGTAGAACATAACTTTCCTGAACAGGAAATCCAAGAAGGCAAAAGCCACCAGA
ACCAGCATGAGGCTCGTTTTGTGGTGGAACTGTGCAAGTACTTCCTGTGCCAGGAGTACC
TGCCGTCCCAGATCACCATCCTCACCACCTACACTGGGCAGCTCTTCTGCCTGCGCAAAC
TCATGCCTGCCAAGACATTTGCTGGTGTCAGGGTCCATGTGGTGGACAAATACCAAGGGG
AGGAGAATGACATCATCCTCCTCTCACTCGTGCGCAGCAACCAGGAAGGCAAGGTGGGTT
TTCTCCAGATACCCAATCGCATCTGTGTGGCCTTGTCCCGCGCCAAGAAGGGGATGTATT
GTGTCGGCAACATGCAGATGTTGGCCAAGGTGCCCTTGTGGAGCAGGATCATCCATACTC
TTCGAGAGAACAATCAAATAGGCTCTGCACTCCGGCTGTGCTGCCAGAACCACCCTGATA
CCCACACCTTGGTATCCAAAGCTTCTGACTTCCAAACAGTGCCCGAAGGAGGCTGTAGCC
TACCCTGTGAGTTCCGGCTGGGCTGTGGGCATGTCTGCACCCGTGCCTGCCACCCCTATG
ACTCCTTGCACAAGGAGTTTCAGTGCATGAAGCCATGCCAGAAGGTGGTCTGCCAGGATG
GGCATCGGTGCCCCCTTGTTTGCTTCCAGGAGTGCCAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               143-462, - strand, RNAz p=0.986732
               

               
               701-819, + strand, RNAz p=0.738746

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-462, - strand, RNAz p=0.986732
               

               
               701-819, + strand, RNAz p=0.738746

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               178-271, - strand, RNAmicro p=0.997424

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               178-271, - strand, RNAmicro p=0.997424

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               103-819, gnl|bosTau2|chr13 (57727653-57726937)
               

               
               103-819, gnl|canFam2|chr24 (38908516-38909456)
               

               
               103-819, gnl|danRer3|chr21 (20757914-20758852)
               

               
               103-819, gnl|dasNov1|scaffold_22201 (8429-7489)
               

               
               103-819, gnl|echTel1|scaffold_310022 (10008-9068)
               

               
               103-819, gnl|fr1|chrUn (194615547-194614610)
               

               
               103-819, gnl|galGal2|chr20 (6445717-6446657)
               

               
               103-819, gnl|hg17|chr20 (47298719-47299659)
               

               
               103-819, gnl|Hg17|chr20 (47299657-47298941)
               

               
               103-819, gnl|loxAfr1|scaffold_13645 (35418-34478)
               

               
               103-819, gnl|mm7|chr2 (166778881-166779821)
               

               
               103-819, gnl|Mm7|chr2 (166779819-166779103)
               

               
               103-819, gnl|monDom2|scaffold_1 (160530234-160531174)
               

               
               103-819, gnl|oryCun1|scaffold_195402 (55967-55027)
               

               
               103-819, gnl|panTro1|chr21 (49991062-49992002)
               

               
               103-819, gnl|rheMac2|chr10 (15226558-15225618)
               

               
               103-819, gnl|rn3|chr3 (158094626-158095566)
               

               
               103-819, gnl|tetNig1|chr11 (2526951-2527888)
               

               
               103-819, gnl|xenTro1|scaffold_316 (509766-510701)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-819, gnl|bosTau2|chr13 (57727653-57726937)
               

               
               103-819, gnl|canFam2|chr24 (38908516-38909456)
               

               
               103-819, gnl|danRer3|chr21 (20757914-20758852)
               

               
               103-819, gnl|dasNov1|scaffold_22201 (8429-7489)
               

               
               103-819, gnl|echTel1|scaffold_310022 (10008-9068)
               

               
               103-819, gnl|fr1|chrUn (194615547-194614610)
               

               
               103-819, gnl|galGal2|chr20 (6445717-6446657)
               

               
               103-819, gnl|hg17|chr20 (47298719-47299659)
               

               
               103-819, gnl|Hg17|chr20 (47299657-47298941)
               

               
               103-819, gnl|loxAfr1|scaffold_13645 (35418-34478)
               

               
               103-819, gnl|mm7|chr2 (166778881-166779821)
               

               
               103-819, gnl|Mm7|chr2 (166779819-166779103)
               

               
               103-819, gnl|monDom2|scaffold_1 (160530234-160531174)
               

               
               103-819, gnl|oryCun1|scaffold_195402 (55967-55027)
               

               
               103-819, gnl|panTro1|chr21 (49991062-49992002)
               

               
               103-819, gnl|rheMac2|chr10 (15226558-15225618)
               

               
               103-819, gnl|rn3|chr3 (158094626-158095566)
               

               
               103-819, gnl|tetNig1|chr11 (2526951-2527888)
               

               
               103-819, gnl|xenTro1|scaffold_316 (509766-510701)

	143-462, - strand, RNAz p=0.986732
	701-819, + strand, RNAz p=0.738746

	103-819, gnl\|bosTau2\|chr13 (57727653-57726937)
	103-819, gnl\|canFam2\|chr24 (38908516-38909456)
	103-819, gnl\|danRer3\|chr21 (20757914-20758852)
	103-819, gnl\|dasNov1\|scaffold_22201 (8429-7489)
	103-819, gnl\|echTel1\|scaffold_310022 (10008-9068)
	103-819, gnl\|fr1\|chrUn (194615547-194614610)
	103-819, gnl\|galGal2\|chr20 (6445717-6446657)
	103-819, gnl\|hg17\|chr20 (47298719-47299659)
	103-819, gnl\|Hg17\|chr20 (47299657-47298941)
	103-819, gnl\|loxAfr1\|scaffold_13645 (35418-34478)
	103-819, gnl\|mm7\|chr2 (166778881-166779821)
	103-819, gnl\|Mm7\|chr2 (166779819-166779103)
	103-819, gnl\|monDom2\|scaffold_1 (160530234-160531174)
	103-819, gnl\|oryCun1\|scaffold_195402 (55967-55027)
	103-819, gnl\|panTro1\|chr21 (49991062-49992002)
	103-819, gnl\|rheMac2\|chr10 (15226558-15225618)
	103-819, gnl\|rn3\|chr3 (158094626-158095566)
	103-819, gnl\|tetNig1\|chr11 (2526951-2527888)
	103-819, gnl\|xenTro1\|scaffold_316 (509766-510701)