Non-Coding RNA Search

Spl1-SPL01D120068

Sequence:


               
               TCTGTAGGAGTGTTTCTGTGGCTCCTCTTCCCACAGAACTCACAGATTTATTGACCTCTT
ACAACTTTCTTTGAAAAGAATGAGCTGTAAGAATCAATGGAATCAGCGAAGGTACTTTGG
TTCCTGTCTCCTTGGATAAATCACACCACTTTGGAAAGTGTCTCTGGGGAAGAATCACAG
TCTAGGATAACACGAACTTTAGTTAGTGCCCTCCCCTCCGCCCCAGCCTGGAAGGGATGT
TGTTCCTCAAACTTTTTCCTGGTGACCACTTTGCTCATTATATATAGGGTGTAATTTTAA
GCCTCACGACTCGCAGCATTTTAAACTGGCAGGTGTACTCCAGCTTCTCCTTGGGCACTT
GTCTGCTGACAAGTCCTCAGAGAGTCAGGTTCTCTTCCTGACACATAAATAAGCGGTGCC
AAGCTGCAGAAATCTCACTGCCGACTGCTGTCTGTGAGCGAGGTCTTCGCTCTGGGTTGT
GAGGCTCTGTTTTGAGAATGTCTTCACACTAAGTCCTCAGAAGGAGAAGGCCATCTCAGA
GAATGTTAACACAAATATTCACTGATTATGCGAGGTCAAAGTGCAAGAGGGGAAAGGACA
GGGATGTCTCCTAAAAGCAGAACCAGGACTTCCTATTgtggcttagtggtaaggaaccca
actagtatccattcagatgcgggtttgttccctggcctcgctcagtgCGTGCAGCCCTAA
AAAGACAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTAGGAGTGTTTCTGTGGCTCCTCTTCCCACAGAACTCACAGATTTATTGACCTCTT
ACAACTTTCTTTGAAAAGAATGAGCTGTAAGAATCAATGGAATCAGCGAAGGTACTTTGG
TTCCTGTCTCCTTGGATAAATCACACCACTTTGGAAAGTGTCTCTGGGGAAGAATCACAG
TCTAGGATAACACGAACTTTAGTTAGTGCCCTCCCCTCCGCCCCAGCCTGGAAGGGATGT
TGTTCCTCAAACTTTTTCCTGGTGACCACTTTGCTCATTATATATAGGGTGTAATTTTAA
GCCTCACGACTCGCAGCATTTTAAACTGGCAGGTGTACTCCAGCTTCTCCTTGGGCACTT
GTCTGCTGACAAGTCCTCAGAGAGTCAGGTTCTCTTCCTGACACATAAATAAGCGGTGCC
AAGCTGCAGAAATCTCACTGCCGACTGCTGTCTGTGAGCGAGGTCTTCGCTCTGGGTTGT
GAGGCTCTGTTTTGAGAATGTCTTCACACTAAGTCCTCAGAAGGAGAAGGCCATCTCAGA
GAATGTTAACACAAATATTCACTGATTATGCGAGGTCAAAGTGCAAGAGGGGAAAGGACA
GGGATGTCTCCTAAAAGCAGAACCAGGACTTCCTATTgtggcttagtggtaaggaaccca
actagtatccattcagatgcgggtttgttccctggcctcgctcagtgCGTGCAGCCCTAA
AAAGACAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-108, - strand, RNAz p=0.872568
               

               
               377-494, + strand, RNAz p=0.714473

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-108, - strand, RNAz p=0.872568
               

               
               377-494, + strand, RNAz p=0.714473

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-616, gnl|bosTau2|chr20 (1706287-1706918)
               

               
               1-616, gnl|Hg17|chr5 (169231734-169232357)
               

               
               1-616, gnl|Mm7|chr11 (34365248-34364719)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-616, gnl|bosTau2|chr20 (1706287-1706918)
               

               
               1-616, gnl|Hg17|chr5 (169231734-169232357)
               

               
               1-616, gnl|Mm7|chr11 (34365248-34364719)

	1-108, - strand, RNAz p=0.872568
	377-494, + strand, RNAz p=0.714473

	1-616, gnl\|bosTau2\|chr20 (1706287-1706918)
	1-616, gnl\|Hg17\|chr5 (169231734-169232357)
	1-616, gnl\|Mm7\|chr11 (34365248-34364719)