Non-Coding RNA Search

Spl1-SPL01E020062

Sequence:


               
               AATATAAGACTTGGTGATTTAATGCCAAAATTAATTATACAGACAAGAAACTCCACAGGA
ATACAGAAAAGAGAAAAATTAATGTGGGCTCGAGAAGTCAGAGAGGCTTTGTGAAAGTGG
TAGGAGGTTGACACCAACGGGAAGCTTGGTGTCAGACGGTATGAGAATAAACCAGTATTG
TCAGGGCTTAAAAGAAAGTTGGGTAGCACGCGGGAAAAGCCAGGCTGGGATGCGAGAGGG
AATCTGACATGCTGTTTCTCGTTGTGGTTTCTCTTTGTGTGACTTTGAGTCAGGAATCGG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGTGTGCGCACGCGCGCACG
CAGAGCCTAATGCAGTCCTGAACATAAAGTCCTGATAAATGCTTGATTGATTGATTCATT
GTAAGCTGATTTTTCTTTTTTCCTCCCGGAGAAACAAGAAGCAAGGTAACTTTGAGATAT
AAGCAGGGCCAGTGTGATTTTTGTATGATAATAGTTTTTCTTGGGTTGAAATGTTTTTTC
CTCCACAGTCTTTGAGAAACAGTTTAGGCTTTTCCAGAGGCAGACCTATAGCTTCAGTTG
TCTCTTCTTTTTTATGTATGTATGTATGTATTAGTTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATAAGACTTGGTGATTTAATGCCAAAATTAATTATACAGACAAGAAACTCCACAGGA
ATACAGAAAAGAGAAAAATTAATGTGGGCTCGAGAAGTCAGAGAGGCTTTGTGAAAGTGG
TAGGAGGTTGACACCAACGGGAAGCTTGGTGTCAGACGGTATGAGAATAAACCAGTATTG
TCAGGGCTTAAAAGAAAGTTGGGTAGCACGCGGGAAAAGCCAGGCTGGGATGCGAGAGGG
AATCTGACATGCTGTTTCTCGTTGTGGTTTCTCTTTGTGTGACTTTGAGTCAGGAATCGG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGTGTGCGCACGCGCGCACG
CAGAGCCTAATGCAGTCCTGAACATAAAGTCCTGATAAATGCTTGATTGATTGATTCATT
GTAAGCTGATTTTTCTTTTTTCCTCCCGGAGAAACAAGAAGCAAGGTAACTTTGAGATAT
AAGCAGGGCCAGTGTGATTTTTGTATGATAATAGTTTTTCTTGGGTTGAAATGTTTTTTC
CTCCACAGTCTTTGAGAAACAGTTTAGGCTTTTCCAGAGGCAGACCTATAGCTTCAGTTG
TCTCTTCTTTTTTATGTATGTATGTATGTATTAGTTTGTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               73-230, + strand, RNAz p=0.873624
               

               
               75-178, - strand, RNAz p=0.824962

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-230, + strand, RNAz p=0.873624
               

               
               75-178, - strand, RNAz p=0.824962

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-314, gnl|bosTau2|chr16 (22661075-22660763)
               

               
               1-314, gnl|canFam2|chr2 (88230627-88230336)
               

               
               1-314, gnl|dasNov1|scaffold_65319 (5642-5345)
               

               
               1-314, gnl|echTel1|scaffold_155241 (2635-2343)
               

               
               1-314, gnl|hg17|chr1 (10597549-10597847)
               

               
               1-314, gnl|Hg17|chr1 (10597654-10597971)
               

               
               1-314, gnl|loxAfr1|scaffold_15664 (21359-21062)
               

               
               1-314, gnl|mm7|chr4 (147970824-147970556)
               

               
               1-314, gnl|Mm7|chr4 (147970741-147970446)
               

               
               1-314, gnl|monDom2|scaffold_177 (60395-60059)
               

               
               1-314, gnl|oryCun1|scaffold_175931 (57056-56769)
               

               
               1-314, gnl|panTro1|chr1 (10795121-10795419)
               

               
               1-314, gnl|rheMac2|chr1 (13696516-13696813)
               

               
               1-314, gnl|rn3|chr5 (166071027-166070763)
               


               
               360-609, gnl|bosTau2|chr16 (22660763-22660498)
               

               
               360-609, gnl|Hg17|chr1 (10597971-10598208)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-314, gnl|bosTau2|chr16 (22661075-22660763)
               

               
               1-314, gnl|canFam2|chr2 (88230627-88230336)
               

               
               1-314, gnl|dasNov1|scaffold_65319 (5642-5345)
               

               
               1-314, gnl|echTel1|scaffold_155241 (2635-2343)
               

               
               1-314, gnl|hg17|chr1 (10597549-10597847)
               

               
               1-314, gnl|Hg17|chr1 (10597654-10597971)
               

               
               1-314, gnl|loxAfr1|scaffold_15664 (21359-21062)
               

               
               1-314, gnl|mm7|chr4 (147970824-147970556)
               

               
               1-314, gnl|Mm7|chr4 (147970741-147970446)
               

               
               1-314, gnl|monDom2|scaffold_177 (60395-60059)
               

               
               1-314, gnl|oryCun1|scaffold_175931 (57056-56769)
               

               
               1-314, gnl|panTro1|chr1 (10795121-10795419)
               

               
               1-314, gnl|rheMac2|chr1 (13696516-13696813)
               

               
               1-314, gnl|rn3|chr5 (166071027-166070763)
               


               
               360-609, gnl|bosTau2|chr16 (22660763-22660498)
               

               
               360-609, gnl|Hg17|chr1 (10597971-10598208)

	73-230, + strand, RNAz p=0.873624
	75-178, - strand, RNAz p=0.824962

	1-314, gnl\|bosTau2\|chr16 (22661075-22660763)
	1-314, gnl\|canFam2\|chr2 (88230627-88230336)
	1-314, gnl\|dasNov1\|scaffold_65319 (5642-5345)
	1-314, gnl\|echTel1\|scaffold_155241 (2635-2343)
	1-314, gnl\|hg17\|chr1 (10597549-10597847)
	1-314, gnl\|Hg17\|chr1 (10597654-10597971)
	1-314, gnl\|loxAfr1\|scaffold_15664 (21359-21062)
	1-314, gnl\|mm7\|chr4 (147970824-147970556)
	1-314, gnl\|Mm7\|chr4 (147970741-147970446)
	1-314, gnl\|monDom2\|scaffold_177 (60395-60059)
	1-314, gnl\|oryCun1\|scaffold_175931 (57056-56769)
	1-314, gnl\|panTro1\|chr1 (10795121-10795419)
	1-314, gnl\|rheMac2\|chr1 (13696516-13696813)
	1-314, gnl\|rn3\|chr5 (166071027-166070763)

	360-609, gnl\|bosTau2\|chr16 (22660763-22660498)
	360-609, gnl\|Hg17\|chr1 (10597971-10598208)