Non-Coding RNA Search

Spl1-SPL01E020103

Sequence:


               
               TCTTTGACTACTCATCTTTATACTAATTCCTCATCCATTGATATGTCTTCCTCCTTGCAG
ATTTTGCCACTAGGAAGACAGGTGTTTGTTACGTAGAATAAACATGAATAATAGAGCCAA
CATATTAGGAAGGCTGAGTTTATTGTCCTAAGTGATAACATATATTGTGAGACTTTCTGA
ATTGCCGAGTCTTGGTTCTTCATCTGTAAAATGGGGATAATCATCTCTTCCTACATTAAG
GGACTTGGAGAGACAAATGAGGGAGATTGGGTGAAAGTGGTTGGGAAGCTCTGAAATGAT
TTGTAATTTCTGCACCCATCTTGCCTTTACATATGGTCCGGGCTGAGGTATGGGAGCTGC
TTTCCTGAGTTTGGTTATGTGGGTGCCAGTGGGACTGGGGGCACCCCTGGGGGACATCAC
TCTGGCTTGGGTGATATCTCCACTTTTGGATGGAAGCCATCACTGCTCTGTCCTCTTAGC
CTGGCAAAACTGAAATAGCAGTTATCCTGTTCTTGATAGGGACACGGTGTTCTCACAACA
GTGGCAGGGCCTTCCTAGGCAGAGGCCACTGCAAGGAGTACACAGTGGTGGCTGCCCACT
GCTGAACTGTGGCTCATGGGCTGCTGTTGGGGAGGTGGTCCCTGAAGGATCTGCTGGAGC
CCATGGTGGGCAGACCCCAGTGAAGGTTTTACTGTATAGCACTGGGAACTATATTCAGTG
TCTTGTAATAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTGACTACTCATCTTTATACTAATTCCTCATCCATTGATATGTCTTCCTCCTTGCAG
ATTTTGCCACTAGGAAGACAGGTGTTTGTTACGTAGAATAAACATGAATAATAGAGCCAA
CATATTAGGAAGGCTGAGTTTATTGTCCTAAGTGATAACATATATTGTGAGACTTTCTGA
ATTGCCGAGTCTTGGTTCTTCATCTGTAAAATGGGGATAATCATCTCTTCCTACATTAAG
GGACTTGGAGAGACAAATGAGGGAGATTGGGTGAAAGTGGTTGGGAAGCTCTGAAATGAT
TTGTAATTTCTGCACCCATCTTGCCTTTACATATGGTCCGGGCTGAGGTATGGGAGCTGC
TTTCCTGAGTTTGGTTATGTGGGTGCCAGTGGGACTGGGGGCACCCCTGGGGGACATCAC
TCTGGCTTGGGTGATATCTCCACTTTTGGATGGAAGCCATCACTGCTCTGTCCTCTTAGC
CTGGCAAAACTGAAATAGCAGTTATCCTGTTCTTGATAGGGACACGGTGTTCTCACAACA
GTGGCAGGGCCTTCCTAGGCAGAGGCCACTGCAAGGAGTACACAGTGGTGGCTGCCCACT
GCTGAACTGTGGCTCATGGGCTGCTGTTGGGGAGGTGGTCCCTGAAGGATCTGCTGGAGC
CCATGGTGGGCAGACCCCAGTGAAGGTTTTACTGTATAGCACTGGGAACTATATTCAGTG
TCTTGTAATAACC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               174-275, - strand, RNAz p=0.858684
               

               
               558-674, - strand, RNAz p=0.640625

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               174-275, - strand, RNAz p=0.858684
               

               
               558-674, - strand, RNAz p=0.640625

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-674, gnl|bosTau2|chr5 (22646272-22645595)
               

               
               1-674, gnl|Hg17|chr12 (49236091-49237707)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-674, gnl|bosTau2|chr5 (22646272-22645595)
               

               
               1-674, gnl|Hg17|chr12 (49236091-49237707)

	174-275, - strand, RNAz p=0.858684
	558-674, - strand, RNAz p=0.640625

	1-674, gnl\|bosTau2\|chr5 (22646272-22645595)
	1-674, gnl\|Hg17\|chr12 (49236091-49237707)