Non-Coding RNA Search

Spl1-SPL01E040083

Sequence:


               
               TTTTGGCAAGCAggatccttaaccaactgcactgggccagagattgaacctgcactgcca
cagagacaatgctgaatactgaacccactgtgccacattgggaactccttaaaccagatt
tttttttgttttgttttagggccacacttgtggcatatggaagttccatgctaggggtcg
aatcagagttgtagctaccagccgcagccacagcaacacagaatctgaggtgagtctgca
cctaaaccacagttgatggcaacgccggatccttaacccactgaactaggccagggatca
aacctgcatcctcgtggatactagtcgggttcattactgctaagccacaatgggaactcc
TTAAACTAGATTCTGATGAACATAGAAATCCTTGATTCTGATTTGGAATTCTCCAAAACA
ATTTTATATTTGGACTCTGGAGTCCTAATTGAGCCTACCTTACCAAGAAAGTAAATGGAG
GTTATCTAGATCTCTTTGCCCACTGTTCTTTAATAAGTTAATTTATTAGTACAACTGAGC
CAGAAATGAGCACAGACAATCTCATCCAATTTATCTGGAGCTCATTTCTGGGGTGAATTT
GGACCCTGGATCCCATGTGACTTTCTACTTGCTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGGCAAGCAggatccttaaccaactgcactgggccagagattgaacctgcactgcca
cagagacaatgctgaatactgaacccactgtgccacattgggaactccttaaaccagatt
tttttttgttttgttttagggccacacttgtggcatatggaagttccatgctaggggtcg
aatcagagttgtagctaccagccgcagccacagcaacacagaatctgaggtgagtctgca
cctaaaccacagttgatggcaacgccggatccttaacccactgaactaggccagggatca
aacctgcatcctcgtggatactagtcgggttcattactgctaagccacaatgggaactcc
TTAAACTAGATTCTGATGAACATAGAAATCCTTGATTCTGATTTGGAATTCTCCAAAACA
ATTTTATATTTGGACTCTGGAGTCCTAATTGAGCCTACCTTACCAAGAAAGTAAATGGAG
GTTATCTAGATCTCTTTGCCCACTGTTCTTTAATAAGTTAATTTATTAGTACAACTGAGC
CAGAAATGAGCACAGACAATCTCATCCAATTTATCTGGAGCTCATTTCTGGGGTGAATTT
GGACCCTGGATCCCATGTGACTTTCTACTTGCTTTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               523-635, - strand, RNAz p=0.68989

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               523-635, - strand, RNAz p=0.68989

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               354-635, gnl|bosTau2|chr1 (71047290-71047567)
               

               
               354-635, gnl|canFam2|chr34 (29639015-29639366)
               

               
               354-635, gnl|echTel1|scaffold_156364 (2621-2953)
               

               
               354-635, gnl|hg17|chr3 (161799217-161799565)
               

               
               354-635, gnl|Hg17|chr3 (161799281-161799561)
               

               
               354-635, gnl|loxAfr1|scaffold_8214 (50630-50256)
               

               
               354-635, gnl|mm7|chr3 (69242287-69242623)
               

               
               354-635, gnl|Mm7|chr3 (69242358-69242620)
               

               
               354-635, gnl|panTro1|chr2 (164978459-164978807)
               

               
               354-635, gnl|rheMac2|chr2 (127091776-127091429)
               

               
               354-635, gnl|rn3|chr2 (159109294-159109635)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               354-635, gnl|bosTau2|chr1 (71047290-71047567)
               

               
               354-635, gnl|canFam2|chr34 (29639015-29639366)
               

               
               354-635, gnl|echTel1|scaffold_156364 (2621-2953)
               

               
               354-635, gnl|hg17|chr3 (161799217-161799565)
               

               
               354-635, gnl|Hg17|chr3 (161799281-161799561)
               

               
               354-635, gnl|loxAfr1|scaffold_8214 (50630-50256)
               

               
               354-635, gnl|mm7|chr3 (69242287-69242623)
               

               
               354-635, gnl|Mm7|chr3 (69242358-69242620)
               

               
               354-635, gnl|panTro1|chr2 (164978459-164978807)
               

               
               354-635, gnl|rheMac2|chr2 (127091776-127091429)
               

               
               354-635, gnl|rn3|chr2 (159109294-159109635)

	354-635, gnl\|bosTau2\|chr1 (71047290-71047567)
	354-635, gnl\|canFam2\|chr34 (29639015-29639366)
	354-635, gnl\|echTel1\|scaffold_156364 (2621-2953)
	354-635, gnl\|hg17\|chr3 (161799217-161799565)
	354-635, gnl\|Hg17\|chr3 (161799281-161799561)
	354-635, gnl\|loxAfr1\|scaffold_8214 (50630-50256)
	354-635, gnl\|mm7\|chr3 (69242287-69242623)
	354-635, gnl\|Mm7\|chr3 (69242358-69242620)
	354-635, gnl\|panTro1\|chr2 (164978459-164978807)
	354-635, gnl\|rheMac2\|chr2 (127091776-127091429)
	354-635, gnl\|rn3\|chr2 (159109294-159109635)