Non-Coding RNA Search

Spl1-SPL01E050087

Sequence:


               
               AAACAAAAAGAAGAAAAGCAAACCAAAACCTGCAGCACAACCAAGTAACAGTATCCCAGA
TTCCAATAAATCGGTTCCCACTCAAGAGGAGCAGTCTGCACCATCCTCAGAGAAAGGTGG
TATTAATGGTTACCACGTCAACGGTGCCATCAATGACACTGAGTCAGTGGACTCACTCAG
TGAAGGTATGGAGACACTTTCAGTAGATGCCAGAGAATTGGAGGATCCTGAGTCTGCCAC
ACCTGATGTGCTGACTAGAACAGGATCCATGCTGGAGAATGGTGTCTCTGATTTTGAGTC
CAAGTCTTTGACTATGCACTCCACTCAGAATTCTCAACAAAATAGGAATGCTGCTAAATC
TCTCTCAAGATCTACCTTAGGACCTCCGTTTTCAAATCTAGGCTTGGAAGATGTTCCACT
CTCTTCCACCAACAAAAAGCTAGGCTCCAATATTGAAAAATCTGTGAAAGACCTCCAGCG
CTGCACAGTGTCTCTTGCACGATATCGAGTTGTAGTTAAAGAAGAAATGGATGCTTCCAT
TAAGAAAATGAAACAAGCTTTTGCCGAACTGCAGAGCTGTTTAATGGATCGCGAAGTAGC
ATTGCTGGCCGAAATGGACAAAGTGAAAGCTGAAGCAATGGAAATTTTGCTCAGCCGTCA
AAAGAAGGCCGAGCTTCTGAAGAAGATGACCGATGTGGCTGTGCGCATGTCAGAGGAGCA
GTTGGTTGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAAAAAGAAGAAAAGCAAACCAAAACCTGCAGCACAACCAAGTAACAGTATCCCAGA
TTCCAATAAATCGGTTCCCACTCAAGAGGAGCAGTCTGCACCATCCTCAGAGAAAGGTGG
TATTAATGGTTACCACGTCAACGGTGCCATCAATGACACTGAGTCAGTGGACTCACTCAG
TGAAGGTATGGAGACACTTTCAGTAGATGCCAGAGAATTGGAGGATCCTGAGTCTGCCAC
ACCTGATGTGCTGACTAGAACAGGATCCATGCTGGAGAATGGTGTCTCTGATTTTGAGTC
CAAGTCTTTGACTATGCACTCCACTCAGAATTCTCAACAAAATAGGAATGCTGCTAAATC
TCTCTCAAGATCTACCTTAGGACCTCCGTTTTCAAATCTAGGCTTGGAAGATGTTCCACT
CTCTTCCACCAACAAAAAGCTAGGCTCCAATATTGAAAAATCTGTGAAAGACCTCCAGCG
CTGCACAGTGTCTCTTGCACGATATCGAGTTGTAGTTAAAGAAGAAATGGATGCTTCCAT
TAAGAAAATGAAACAAGCTTTTGCCGAACTGCAGAGCTGTTTAATGGATCGCGAAGTAGC
ATTGCTGGCCGAAATGGACAAAGTGAAAGCTGAAGCAATGGAAATTTTGCTCAGCCGTCA
AAAGAAGGCCGAGCTTCTGAAGAAGATGACCGATGTGGCTGTGCGCATGTCAGAGGAGCA
GTTGGTTGAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874890|ref|XP_608676.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874890|ref|XP_608676.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-320, - strand, RNAz p=0.981534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-320, - strand, RNAz p=0.981534

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-732, gnl|bosTau2|chr13 (24679109-24679838)
               

               
               2-732, gnl|Hg17|chr12 (48174791-48199216)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-732, gnl|bosTau2|chr13 (24679109-24679838)
               

               
               2-732, gnl|Hg17|chr12 (48174791-48199216)

	2-732, gnl\|bosTau2\|chr13 (24679109-24679838)
	2-732, gnl\|Hg17\|chr12 (48174791-48199216)