Non-Coding RNA Search

Spl1-SPL01E100075

Sequence:


               
               TTTTGGTGAAAAATCAACTGTCCATCACTCTTTTTTAAAGTGCTTCCCAGGACCGTCCGC
TTTACCGCCCCATTCGAAGTTGTAGGGACCAGGCCCGGGACAGAGAACCAAGCCAGAGGG
TGAAGTGGCAGGTGTCCCCAGCAATTCCTTCATGTTTTGGATGCGGTTTGGGGTGGAGAG
AACGGGGCTTTGCTTATACATAAGATGGAGTAAACAGGGCAGCTGTTTTTTGTTGTTGTG
TTTCTGTGTTGCTTCCTTCCACTGAAAACTTTTGTCTGGGGGCAGTGGGAAAGAGATTTA
GGACCAAAGTAAATCTTAAACGAATGTAAATCTTCCTTACAGGAACGGTGACACAATGCA
AGTACATCTTGATCTAATTTTAATGAAGGATTGAAAATAGCTGCTGTGTTCAGTATCACT
GACGCCAAAACGGCTCACTTACATAATCTTCTTTGTTGGGATGTGTCAGTGGCATGTATA
ATTTTGATAAATTATTAATGTTAAAGGTTTGGTCGGGCAATGGTATTGAAACAATGTTTT
CACAAGTTTTGCAATACAGTGGAGTGTGAACTTTTGGTTATCTTGATAACCTGCATATTT
TCCATGCAAAGTGAAATCAAACCTTGTCCCCAACCAAAATTCTCTCAACTGTGAAATGTA
GATTTGTCAGTACTGAAGACAGGAGAAGTTATTTTCTCAATGATAAAGCAGTGCCTTCTT
GATGTCAGGCGCTCCATTGGGCATTTTTTTTCTGCTCATGGAGCTTATAACAACAAAAAA
ATGACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGGTGAAAAATCAACTGTCCATCACTCTTTTTTAAAGTGCTTCCCAGGACCGTCCGC
TTTACCGCCCCATTCGAAGTTGTAGGGACCAGGCCCGGGACAGAGAACCAAGCCAGAGGG
TGAAGTGGCAGGTGTCCCCAGCAATTCCTTCATGTTTTGGATGCGGTTTGGGGTGGAGAG
AACGGGGCTTTGCTTATACATAAGATGGAGTAAACAGGGCAGCTGTTTTTTGTTGTTGTG
TTTCTGTGTTGCTTCCTTCCACTGAAAACTTTTGTCTGGGGGCAGTGGGAAAGAGATTTA
GGACCAAAGTAAATCTTAAACGAATGTAAATCTTCCTTACAGGAACGGTGACACAATGCA
AGTACATCTTGATCTAATTTTAATGAAGGATTGAAAATAGCTGCTGTGTTCAGTATCACT
GACGCCAAAACGGCTCACTTACATAATCTTCTTTGTTGGGATGTGTCAGTGGCATGTATA
ATTTTGATAAATTATTAATGTTAAAGGTTTGGTCGGGCAATGGTATTGAAACAATGTTTT
CACAAGTTTTGCAATACAGTGGAGTGTGAACTTTTGGTTATCTTGATAACCTGCATATTT
TCCATGCAAAGTGAAATCAAACCTTGTCCCCAACCAAAATTCTCTCAACTGTGAAATGTA
GATTTGTCAGTACTGAAGACAGGAGAAGTTATTTTCTCAATGATAAAGCAGTGCCTTCTT
GATGTCAGGCGCTCCATTGGGCATTTTTTTTCTGCTCATGGAGCTTATAACAACAAAAAA
ATGACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               192-299, + strand, RNAz p=0.729167

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-299, + strand, RNAz p=0.729167

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               11-299, gnl|bosTau2|chr9 (1451706-1451990)
               

               
               11-299, gnl|Hg17|chr6 (72185959-72185686)
               

               
               11-299, gnl|Mm7|chr1 (23469288-23469571)
               


               
               303-707, gnl|bosTau2|chr9 (1452028-1452435)
               

               
               303-707, gnl|Hg17|chr6 (72185637-72185220)
               

               
               303-707, gnl|Mm7|chr1 (23469609-23470011)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-299, gnl|bosTau2|chr9 (1451706-1451990)
               

               
               11-299, gnl|Hg17|chr6 (72185959-72185686)
               

               
               11-299, gnl|Mm7|chr1 (23469288-23469571)
               


               
               303-707, gnl|bosTau2|chr9 (1452028-1452435)
               

               
               303-707, gnl|Hg17|chr6 (72185637-72185220)
               

               
               303-707, gnl|Mm7|chr1 (23469609-23470011)

	11-299, gnl\|bosTau2\|chr9 (1451706-1451990)
	11-299, gnl\|Hg17\|chr6 (72185959-72185686)
	11-299, gnl\|Mm7\|chr1 (23469288-23469571)

	303-707, gnl\|bosTau2\|chr9 (1452028-1452435)
	303-707, gnl\|Hg17\|chr6 (72185637-72185220)
	303-707, gnl\|Mm7\|chr1 (23469609-23470011)