Non-Coding RNA Search

Spl1-SPL01F030083

Sequence:


               
               ACTGTTTGGGGTCGAGAGGGATGGAGGCTAATCCTAAAGCAAGTTGGAAAAAAACAGAGG
TGGGAGAGGAGGGGGGGGAACAGCAGCCTAACAGACTGGCAGGCAGGCTCCCCTCACCCT
GGATCAAAGATAGAACTTGAAACAGGAGGGCAACATTTTTCCTAGGAACCCATTGGAATC
CTCATTTTCTACTTTTAACTCAGGTACCCCCTCACCACCAAATGATTTTTCCCTCTCCCC
TACAGATTCATGCCCCCCCTTTCCCAGTCCCTCTTCTAGAACTTTCCTGAAGAGGAAACC
TATTTCTTTTTGGGGGGAGGGGTTCCCCATTCCATGTCTTCAGATAATGAATGCTTACTT
TATCCTCTCTCTTCATCCACCTCCCAAAATGAAGAATGGAAGCAGGAATACAGTAACTAG
CAAAAATTGAGAATAAACTATTCTGCCCCTCGCAGTTTAATACAGTTTTAACTAATGGAT
TTTTTTTTGTTTTGTTTTGTTTTAAGAGAAGAATAATGGGGAAACACGGATCTTTTATTT
TAGGAAACTGTTATGGTAAGATGTATGTCAGACTTGACAAATGGAACTAACGCTCCTCGG
CTGCTTCTTGTCCTTGTCTTAAACAGGAATTAAGTTAAACACAGTGCTGAATGTTAATTA
CATGTTTACTGGCTAATGAAAATTACAAATGGTTTTGCCACCTCAAACAATGATGAAAAC
TCTGAAGACACTGTAATTATATACTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTTTGGGGTCGAGAGGGATGGAGGCTAATCCTAAAGCAAGTTGGAAAAAAACAGAGG
TGGGAGAGGAGGGGGGGGAACAGCAGCCTAACAGACTGGCAGGCAGGCTCCCCTCACCCT
GGATCAAAGATAGAACTTGAAACAGGAGGGCAACATTTTTCCTAGGAACCCATTGGAATC
CTCATTTTCTACTTTTAACTCAGGTACCCCCTCACCACCAAATGATTTTTCCCTCTCCCC
TACAGATTCATGCCCCCCCTTTCCCAGTCCCTCTTCTAGAACTTTCCTGAAGAGGAAACC
TATTTCTTTTTGGGGGGAGGGGTTCCCCATTCCATGTCTTCAGATAATGAATGCTTACTT
TATCCTCTCTCTTCATCCACCTCCCAAAATGAAGAATGGAAGCAGGAATACAGTAACTAG
CAAAAATTGAGAATAAACTATTCTGCCCCTCGCAGTTTAATACAGTTTTAACTAATGGAT
TTTTTTTTGTTTTGTTTTGTTTTAAGAGAAGAATAATGGGGAAACACGGATCTTTTATTT
TAGGAAACTGTTATGGTAAGATGTATGTCAGACTTGACAAATGGAACTAACGCTCCTCGG
CTGCTTCTTGTCCTTGTCTTAAACAGGAATTAAGTTAAACACAGTGCTGAATGTTAATTA
CATGTTTACTGGCTAATGAAAATTACAAATGGTTTTGCCACCTCAAACAATGATGAAAAC
TCTGAAGACACTGTAATTATATACTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               235-390, - strand, RNAz p=0.999111

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-390, - strand, RNAz p=0.999111

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               235-390, BW966055 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW966055.1|), blast E-value=0, identity=95.51% 
               

               
               235-390, CJ020516 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ020516.1|), blast E-value=0, identity=95.51% 
               

               
               235-385, DB811286 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB811286.1|), blast E-value=0, identity=95.36%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               235-390, BW966055 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW966055.1|), blast E-value=0, identity=95.51% 
               

               
               235-390, CJ020516 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ020516.1|), blast E-value=0, identity=95.51% 
               

               
               235-385, DB811286 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB811286.1|), blast E-value=0, identity=95.36%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-748, gnl|bosTau2|chr21 (5740786-5740048)
               

               
               1-748, gnl|Hg17|chr15 (94669952-94669214)
               

               
               1-748, gnl|Mm7|chr7 (66222468-66223214)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-748, gnl|bosTau2|chr21 (5740786-5740048)
               

               
               1-748, gnl|Hg17|chr15 (94669952-94669214)
               

               
               1-748, gnl|Mm7|chr7 (66222468-66223214)

	235-390, BW966055 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BW966055.1\|), blast E-value=0, identity=95.51%
	235-390, CJ020516 full-length enriched swine cDNA library, adult spleen Sus (dbj\|CJ020516.1\|), blast E-value=0, identity=95.51%
	235-385, DB811286 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB811286.1\|), blast E-value=0, identity=95.36%

	1-748, gnl\|bosTau2\|chr21 (5740786-5740048)
	1-748, gnl\|Hg17\|chr15 (94669952-94669214)
	1-748, gnl\|Mm7\|chr7 (66222468-66223214)