Non-Coding RNA Search

Spl1-SPL01F060077

Sequence:


               
               ACGGTATACTTCTAATAAGTCAGACTTCCTAATTGTATCTATAATGGCTGTTTCCATATG
GAATTACTGCCAGTGGGTAGGCCTAACATCTGTCCTTGTAAAACTTTCACTTGAGCGGAG
AGTTAGCAGAGGATTGTAGTTCTTCATGGTTTTTCACCCGGTAACATTACTTTAGCGAAT
GTGCTTCAGACCAGGGTCTGATGCTTAATCTGCAAGGCTCAGAAAGCAGTTTTATCAGGA
GGATACTGAGAGATGGTGAAACTGTCTCTCTGGAAAAGACTCACTCTCCATCCTAGTTGT
CAAGGCAGTGGTCTTCCTGGTGGCAGGTCTACCCAGGAAGAGGTCGCTGGGTGAGTATGG
CATCAGAATGTGGAATGGTTAGGTAATTTGAAGGTTTCGTAGTGTCAGACTAGGAGTGCC
AGATGTAGCCGTTTCTACAATAGGCGTTCCATGCTGTTCTCCATGCTTCATCATGAGGCA
GTGATCCTTGATTGCTGCTGGCCTGGATTCCTTCTCCCATTGTTGGCTCTTTCTTGTAGA
ACCTTCTGTGGTTTTTCTTTTTTCTGTGCTGCTTACACTTCTCAGCCCCTGATTTGATTG
GAGAAGGTGTTCTTGAAGTAGATCCGTATAACGTGTCCGACTAAAGGCAGGTGTCTCTAA
GCCTAGACATTTGCCTTGCTCTGTGAGGAAACTTTATCTTTAGCCATGCTGAACAGAAAT
TAACTCTTTTTCATGTATTTATGACATTGAGACTCTAAAGCCCGTTTCTCAAGAAAGCTT
GTTTAGCACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGTATACTTCTAATAAGTCAGACTTCCTAATTGTATCTATAATGGCTGTTTCCATATG
GAATTACTGCCAGTGGGTAGGCCTAACATCTGTCCTTGTAAAACTTTCACTTGAGCGGAG
AGTTAGCAGAGGATTGTAGTTCTTCATGGTTTTTCACCCGGTAACATTACTTTAGCGAAT
GTGCTTCAGACCAGGGTCTGATGCTTAATCTGCAAGGCTCAGAAAGCAGTTTTATCAGGA
GGATACTGAGAGATGGTGAAACTGTCTCTCTGGAAAAGACTCACTCTCCATCCTAGTTGT
CAAGGCAGTGGTCTTCCTGGTGGCAGGTCTACCCAGGAAGAGGTCGCTGGGTGAGTATGG
CATCAGAATGTGGAATGGTTAGGTAATTTGAAGGTTTCGTAGTGTCAGACTAGGAGTGCC
AGATGTAGCCGTTTCTACAATAGGCGTTCCATGCTGTTCTCCATGCTTCATCATGAGGCA
GTGATCCTTGATTGCTGCTGGCCTGGATTCCTTCTCCCATTGTTGGCTCTTTCTTGTAGA
ACCTTCTGTGGTTTTTCTTTTTTCTGTGCTGCTTACACTTCTCAGCCCCTGATTTGATTG
GAGAAGGTGTTCTTGAAGTAGATCCGTATAACGTGTCCGACTAAAGGCAGGTGTCTCTAA
GCCTAGACATTTGCCTTGCTCTGTGAGGAAACTTTATCTTTAGCCATGCTGAACAGAAAT
TAACTCTTTTTCATGTATTTATGACATTGAGACTCTAAAGCCCGTTTCTCAAGAAAGCTT
GTTTAGCACTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               267-386, + strand, RNAz p=0.97578

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-386, + strand, RNAz p=0.97578

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               73-792, gnl|bosTau2|chr9 (57089412-57088688)
               

               
               73-792, gnl|Hg17|chr6 (157476958-157477625)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-792, gnl|bosTau2|chr9 (57089412-57088688)
               

               
               73-792, gnl|Hg17|chr6 (157476958-157477625)

	73-792, gnl\|bosTau2\|chr9 (57089412-57088688)
	73-792, gnl\|Hg17\|chr6 (157476958-157477625)