Non-Coding RNA Search

Spl1-SPL01F070064

Sequence:


               
               ATTTGAGGCAGAGAGAGATGGACATAGGGAAACCAGTTAGACAGTTGTTGCAATCATCTA
GTTGTGAGTCCATAAACCCATAGATAAGAACAAGGATGGAGAAGAAAGGGCGAGTTAAGA
GATACTGTGTGCAAAGACTGGACATGACCTTCTGATGGCCAAGGAGGAAAAAGGAAGAGT
TAATTTTGTGTCCTGTGGCCAATGAGTTCTCCAGGTCCTGGCACAGTTTCACTAGATTTA
TTTCAACAACTTTCAGACTGAGGGCCAGAAGCTATAGAGAGAGGATACGGGGGCTAGACT
AGAGAAACCAGCTAAATGTGTTTTGAAACTGTGTATATTAGGTATTGCTGTTTATATAGT
TTAATGATTTCATGAAGCGATTTGCCTGCTACAGATTCGTTCACATCAAAGAATGCATTT
CTGCTATACTGATTATTTTGCAGTTAAGCTTGAGTCCAGTTTCCCCTGGAAGCTATGTTT
TGATAAGTCTTTGAACACATAGTCAAATGTGAATGAAGTCACCCTTGGTGTTAGTTTATC
ACTACAGTGATAACCCATAGAGAAAAAAACGTAACTCCATGCAGGTTTTCCTAGTAACCA
GTGCACCAGTGGCACCATATCTTATAGATGAGATTGTTATTATTACCGTATTTATGTGAC
TTGACTGCCTGTGTAAATATTATAAACATCTTTGAAAAAATGAAAGAGAAAGCAGCAGTG
ATAGCAACAATCTGGGAACCTTGACCAACATACCACAGAACTAGAGATGACTCACTAGTT
AATTAACAAACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGAGGCAGAGAGAGATGGACATAGGGAAACCAGTTAGACAGTTGTTGCAATCATCTA
GTTGTGAGTCCATAAACCCATAGATAAGAACAAGGATGGAGAAGAAAGGGCGAGTTAAGA
GATACTGTGTGCAAAGACTGGACATGACCTTCTGATGGCCAAGGAGGAAAAAGGAAGAGT
TAATTTTGTGTCCTGTGGCCAATGAGTTCTCCAGGTCCTGGCACAGTTTCACTAGATTTA
TTTCAACAACTTTCAGACTGAGGGCCAGAAGCTATAGAGAGAGGATACGGGGGCTAGACT
AGAGAAACCAGCTAAATGTGTTTTGAAACTGTGTATATTAGGTATTGCTGTTTATATAGT
TTAATGATTTCATGAAGCGATTTGCCTGCTACAGATTCGTTCACATCAAAGAATGCATTT
CTGCTATACTGATTATTTTGCAGTTAAGCTTGAGTCCAGTTTCCCCTGGAAGCTATGTTT
TGATAAGTCTTTGAACACATAGTCAAATGTGAATGAAGTCACCCTTGGTGTTAGTTTATC
ACTACAGTGATAACCCATAGAGAAAAAAACGTAACTCCATGCAGGTTTTCCTAGTAACCA
GTGCACCAGTGGCACCATATCTTATAGATGAGATTGTTATTATTACCGTATTTATGTGAC
TTGACTGCCTGTGTAAATATTATAAACATCTTTGAAAAAATGAAAGAGAAAGCAGCAGTG
ATAGCAACAATCTGGGAACCTTGACCAACATACCACAGAACTAGAGATGACTCACTAGTT
AATTAACAAACTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-226, + strand, RNAz p=0.837765

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-226, + strand, RNAz p=0.837765

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               123-244, + strand, RNAmicro p=0.99188

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               123-244, + strand, RNAmicro p=0.99188

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-374, gnl|bosTau2|chrX (308729-308348)
               

               
               2-374, gnl|Hg17|chrX (117604960-117605333)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-374, gnl|bosTau2|chrX (308729-308348)
               

               
               2-374, gnl|Hg17|chrX (117604960-117605333)

	2-374, gnl\|bosTau2\|chrX (308729-308348)
	2-374, gnl\|Hg17\|chrX (117604960-117605333)