Non-Coding RNA Search

Spl1-SPL01F110071

Sequence:


               
               AAAAAGGTGTATGAGGGCACCAGACGGTAAATATTTCAGTCTTTGCAGGCTATGCAGTTT
CTGTCACAGCTACTCAGTGCTGCCATTGTAGGGCCAAGCAGCTGTAAATAACACATGAAG
GAGGTGGCTGTGTTCTAATAAAACTTCATTTACAAGACCCAGGGACTGGGCCATAGCTGG
CTGACCCCTGCTCTAAGCATAACTCCTTCCAGCTGAGAATTGGCAAACACGTTTAACCGG
GTCTCCTGTGGGCGATGTGCTTTGGAGCCACCAGAAGAGCTCAGTGAACAATTGCTTTTC
TTTCCCAGATCCTGCCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCTCCTCAGGA
AAAGTCCACCTCCCCCGGCAGGGCTGCTGAAAAGAAGGCGAAGGATGACAGCAGGCGAGT
GGCCAAGAGCGTTCAGGACCTAAGTGATGTTTCTGCGGATGAAGTGGGCATCCCACTCCG
GGTATGGATACAGACTCAGACATCCTTCTTGGGCTTCGTCTTAAGCAAGTGACAGGTGTA
CACCCTGAATCCATGTGAACCCCCGTTATGGGTGTCAGAGACCTCAAAAGGAGGCTCCTT
GCCACTGTCCACCCTCCAAGCCCACCGAAGCCTGCAGAGCCTCCAGGGGCTGGTGCCAGC
CTCCTGAGCCCACCTTGATCCTGGGCCCAGTGTGAGATAGCTTCTCCCAAAGTATATGTC
AGGTGTTACTCAATCCAGGTGAAAAATGTTTCCTGGTCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGGTGTATGAGGGCACCAGACGGTAAATATTTCAGTCTTTGCAGGCTATGCAGTTT
CTGTCACAGCTACTCAGTGCTGCCATTGTAGGGCCAAGCAGCTGTAAATAACACATGAAG
GAGGTGGCTGTGTTCTAATAAAACTTCATTTACAAGACCCAGGGACTGGGCCATAGCTGG
CTGACCCCTGCTCTAAGCATAACTCCTTCCAGCTGAGAATTGGCAAACACGTTTAACCGG
GTCTCCTGTGGGCGATGTGCTTTGGAGCCACCAGAAGAGCTCAGTGAACAATTGCTTTTC
TTTCCCAGATCCTGCCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCTCCTCAGGA
AAAGTCCACCTCCCCCGGCAGGGCTGCTGAAAAGAAGGCGAAGGATGACAGCAGGCGAGT
GGCCAAGAGCGTTCAGGACCTAAGTGATGTTTCTGCGGATGAAGTGGGCATCCCACTCCG
GGTATGGATACAGACTCAGACATCCTTCTTGGGCTTCGTCTTAAGCAAGTGACAGGTGTA
CACCCTGAATCCATGTGAACCCCCGTTATGGGTGTCAGAGACCTCAAAAGGAGGCTCCTT
GCCACTGTCCACCCTCCAAGCCCACCGAAGCCTGCAGAGCCTCCAGGGGCTGGTGCCAGC
CTCCTGAGCCCACCTTGATCCTGGGCCCAGTGTGAGATAGCTTCTCCCAAAGTATATGTC
AGGTGTTACTCAATCCAGGTGAAAAATGTTTCCTGGTCACAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               535-653, - strand, RNAz p=0.891817

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               535-653, - strand, RNAz p=0.891817

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               14-653, gnl|bosTau2|chr26 (10814329-10814974)
               

               
               14-653, gnl|Hg17|chr10 (97149223-97148630)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-653, gnl|bosTau2|chr26 (10814329-10814974)
               

               
               14-653, gnl|Hg17|chr10 (97149223-97148630)

	14-653, gnl\|bosTau2\|chr26 (10814329-10814974)
	14-653, gnl\|Hg17\|chr10 (97149223-97148630)