Spl1-SPL01G020083
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCTCTCCCGGCCGGGAATCCATTCCGGCCTGGGAGCCGGAGCGGCCTGGCCGCCGTGT GCCCGAACCCTTGGCCGTCCGGAGGTCCTTCCTCCCGTGCGTCTGCCTGCCGGTGCGTCC GCCTGTCCGCTGGCCCAGAACAGAGGCTCAGAGGTAAAGTGACTTGTTCAGCTATGAGAG AGAGCATCAGGATCTGAACcagatgaggaccctgaggcccagagaggggaagtgacttgc ccaaggtcacccagcagGGAGAGGTGGAGCAGGTCCTCTAGTGCAAGACCCTTGACTCCA TACCTGGTGTTTGTGCTGAGACCTCGGGCTACTTCCCAGGTCCTCTGGGAGAGCCCCTGC CTTCCACCAGCAGAACCATGGGCAGCAACAAGAGCAAGCCCAAGGACGCCAGCCAGCGGC GCCGCAGCCTGGAGCCTGCCGAGAACACCCACGGCGGCGGGGGCGGCGGCGGCGGTGGCG GTGGTGCCTTTCCCACCTCACAGACCCCCAGCAAGCCAGCCTCCGCGGATGGTCATCGAG GCCCCAGCACGGCCTTCGCCCCTGCGGCCGCCGAGCCCAAGCTGTTTGGTGGCTTCAACT CCTCGGACACTGTCACCTCCCCGCAGAGGGCGGGGCCCCTGGCTGGCGGGGTGACCACCT TTGTAGCCCTCTATGACTATGAGTCACGGACAGAGACTGACCCGTCTTTCAGAAAGGGGA ACGGCTCCAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCTCTCCCGGCCGGGAATCCATTCCGGCCTGGGAGCCGGAGCGGCCTGGCCGCCGTGT GCCCGAACCCTTGGCCGTCCGGAGGTCCTTCCTCCCGTGCGTCTGCCTGCCGGTGCGTCC GCCTGTCCGCTGGCCCAGAACAGAGGCTCAGAGGTAAAGTGACTTGTTCAGCTATGAGAG AGAGCATCAGGATCTGAACcagatgaggaccctgaggcccagagaggggaagtgacttgc ccaaggtcacccagcagGGAGAGGTGGAGCAGGTCCTCTAGTGCAAGACCCTTGACTCCA TACCTGGTGTTTGTGCTGAGACCTCGGGCTACTTCCCAGGTCCTCTGGGAGAGCCCCTGC CTTCCACCAGCAGAACCATGGGCAGCAACAAGAGCAAGCCCAAGGACGCCAGCCAGCGGC GCCGCAGCCTGGAGCCTGCCGAGAACACCCACGGCGGCGGGGGCGGCGGCGGCGGTGGCG GTGGTGCCTTTCCCACCTCACAGACCCCCAGCAAGCCAGCCTCCGCGGATGGTCATCGAG GCCCCAGCACGGCCTTCGCCCCTGCGGCCGCCGAGCCCAAGCTGTTTGGTGGCTTCAACT CCTCGGACACTGTCACCTCCCCGCAGAGGGCGGGGCCCCTGGCTGGCGGGGTGACCACCT TTGTAGCCCTCTATGACTATGAGTCACGGACAGAGACTGACCCGTCTTTCAGAAAGGGGA ACGGCTCCAGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 238-370, + strand, RNAz p=0.974589 | |
| 239-370, - strand, RNAz p=0.983979 | |
| 529-646, - strand, RNAz p=0.942644 | |
| 537-646, - strand, RNAz p=0.993623 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 238-370, + strand, RNAz p=0.974589 | |
| 239-370, - strand, RNAz p=0.983979 | |
| 529-646, - strand, RNAz p=0.942644 | |
| 537-646, - strand, RNAz p=0.993623 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC051270, + |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 2-138, gnl|bosTau2|chr13 (49378493-49378356) | |
| 2-138, gnl|Hg17|chr20 (35407936-35408072) | |
| 2-138, gnl|Mm7|chr2 (157165183-157165304) | |
| 200-370, gnl|bosTau2|chr13 (49346203-49346033) | |
| 200-370, gnl|canFam2|chr24 (28969046-28969194) | |
| 200-370, gnl|echTel1|scaffold_273717 (296-156) | |
| 200-370, gnl|hg17|chr20 (35444432-35444587) | |
| 200-370, gnl|Hg17|chr20 (35444433-35444603) | |
| 200-370, gnl|loxAfr1|scaffold_35331 (6914-6789) | |
| 200-370, gnl|mm7|chr2 (157196488-157196642) | |
| 200-370, gnl|oryCun1|scaffold_155171 (401-301) | |
| 200-370, gnl|panTro1|chr21 (37766326-37766483) | |
| 200-370, gnl|rheMac2|chr10 (27079578-27079423) | |
| 200-370, gnl|rn3|chr3 (148061578-148061731) | |
| 371-646, gnl|bosTau2|chr13 (49344606-49344331) | |
| 371-646, gnl|canFam2|chr24 (28970093-28970289) | |
| 371-646, gnl|danRer3|chr23 (28214067-28213873) | |
| 371-646, gnl|fr1|chrUn (40129073-40129283) | |
| 371-646, gnl|galGal2|chr20 (4812481-4812668) | |
| 371-646, gnl|hg17|chr20 (35445965-35446161) | |
| 371-646, gnl|Hg17|chr20 (35445964-35446221) | |
| 371-646, gnl|loxAfr1|scaffold_35331 (5620-5424) | |
| 371-646, gnl|mm7|chr2 (157197969-157198162) | |
| 371-646, gnl|Mm7|chr2 (157197968-157198222) | |
| 371-646, gnl|monDom2|scaffold_6 (2210484-2210297) | |
| 371-646, gnl|oryCun1|scaffold_145521 (16869-17065) | |
| 371-646, gnl|panTro1|chr21 (37767875-37768071) | |
| 371-646, gnl|rheMac2|chr10 (27078046-27077850) | |
| 371-646, gnl|rn3|chr3 (148063159-148063355) | |
| 371-646, gnl|tetNig1|chr11 (7430272-7430045) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-138, gnl|bosTau2|chr13 (49378493-49378356) | |
| 2-138, gnl|Hg17|chr20 (35407936-35408072) | |
| 2-138, gnl|Mm7|chr2 (157165183-157165304) | |
| 200-370, gnl|bosTau2|chr13 (49346203-49346033) | |
| 200-370, gnl|canFam2|chr24 (28969046-28969194) | |
| 200-370, gnl|echTel1|scaffold_273717 (296-156) | |
| 200-370, gnl|hg17|chr20 (35444432-35444587) | |
| 200-370, gnl|Hg17|chr20 (35444433-35444603) | |
| 200-370, gnl|loxAfr1|scaffold_35331 (6914-6789) | |
| 200-370, gnl|mm7|chr2 (157196488-157196642) | |
| 200-370, gnl|oryCun1|scaffold_155171 (401-301) | |
| 200-370, gnl|panTro1|chr21 (37766326-37766483) | |
| 200-370, gnl|rheMac2|chr10 (27079578-27079423) | |
| 200-370, gnl|rn3|chr3 (148061578-148061731) | |
| 371-646, gnl|bosTau2|chr13 (49344606-49344331) | |
| 371-646, gnl|canFam2|chr24 (28970093-28970289) | |
| 371-646, gnl|danRer3|chr23 (28214067-28213873) | |
| 371-646, gnl|fr1|chrUn (40129073-40129283) | |
| 371-646, gnl|galGal2|chr20 (4812481-4812668) | |
| 371-646, gnl|hg17|chr20 (35445965-35446161) | |
| 371-646, gnl|Hg17|chr20 (35445964-35446221) | |
| 371-646, gnl|loxAfr1|scaffold_35331 (5620-5424) | |
| 371-646, gnl|mm7|chr2 (157197969-157198162) | |
| 371-646, gnl|Mm7|chr2 (157197968-157198222) | |
| 371-646, gnl|monDom2|scaffold_6 (2210484-2210297) | |
| 371-646, gnl|oryCun1|scaffold_145521 (16869-17065) | |
| 371-646, gnl|panTro1|chr21 (37767875-37768071) | |
| 371-646, gnl|rheMac2|chr10 (27078046-27077850) | |
| 371-646, gnl|rn3|chr3 (148063159-148063355) | |
| 371-646, gnl|tetNig1|chr11 (7430272-7430045) |