Non-Coding RNA Search

Spl1-SPL01G020101

Sequence:


               
               GATACCCAGGCTACTTCCCAGACCAAATAAACAAAATTTCTGGGGATAGACCCGGATCCG
TATCTTTTCAGCCTGCCCAGACAGTTCCAGGATGTGGCCGATGCCGAGAACCACAGCCCT
CAAGGCACTTGCTGGCCACCTGCGTCCAGCCCTTTAAGGGGGGCCGCTGGATGTTTTCAT
TTACCAACCCCTGCCGTTTATAGGCAGTTCCTCGGGTCACAGTCATCCCAGAGTCTCTAT
GCCAACTTTTTTCCCACTGAAGTTTCTCCTCATCGAGAAACTTTTCCAGATCCTTCATCA
GTATTTTCATTGTACATTCTGATCATTTTAGCATGAGGAGCTGTCAATTCCAGATCTGGG
AGTCAGGAGTCTTAAGTGTTCTTGGAAAGGACTGTTCTCCCGTTCCTGGAGTCGGGGGGG
TTCGTTGACAATGGCTTCATTTGTCCCCCTGCTTGTCATAATCAGCCTTCTCAATTCTAA
GCTGTTTCCTCTTGTTCCCACTCAATTCCAAATTCTATCCACCGACCAGAGGTTTGTGCT
TCCAGCCTCGCAGTAGGCTGTGACAGCCTTTTGACTCTAAGTTGCATTCCTATCTACAAA
GTTCCAGGCACATTCCTCTGGAAAGAAACAGTGCAGGGCAAAGGATCGCCTAAGAATATA
GTCGTTTATGCTCTGAAGTGAGCACATGCAGTTCCTTCCCATGTTTTATTAGCAATTCTG
AAATGCCCAGTGAATGTTTTGATGGAAATTTGTCTACTGGACACCAGAAAAGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATACCCAGGCTACTTCCCAGACCAAATAAACAAAATTTCTGGGGATAGACCCGGATCCG
TATCTTTTCAGCCTGCCCAGACAGTTCCAGGATGTGGCCGATGCCGAGAACCACAGCCCT
CAAGGCACTTGCTGGCCACCTGCGTCCAGCCCTTTAAGGGGGGCCGCTGGATGTTTTCAT
TTACCAACCCCTGCCGTTTATAGGCAGTTCCTCGGGTCACAGTCATCCCAGAGTCTCTAT
GCCAACTTTTTTCCCACTGAAGTTTCTCCTCATCGAGAAACTTTTCCAGATCCTTCATCA
GTATTTTCATTGTACATTCTGATCATTTTAGCATGAGGAGCTGTCAATTCCAGATCTGGG
AGTCAGGAGTCTTAAGTGTTCTTGGAAAGGACTGTTCTCCCGTTCCTGGAGTCGGGGGGG
TTCGTTGACAATGGCTTCATTTGTCCCCCTGCTTGTCATAATCAGCCTTCTCAATTCTAA
GCTGTTTCCTCTTGTTCCCACTCAATTCCAAATTCTATCCACCGACCAGAGGTTTGTGCT
TCCAGCCTCGCAGTAGGCTGTGACAGCCTTTTGACTCTAAGTTGCATTCCTATCTACAAA
GTTCCAGGCACATTCCTCTGGAAAGAAACAGTGCAGGGCAAAGGATCGCCTAAGAATATA
GTCGTTTATGCTCTGAAGTGAGCACATGCAGTTCCTTCCCATGTTTTATTAGCAATTCTG
AAATGCCCAGTGAATGTTTTGATGGAAATTTGTCTACTGGACACCAGAAAAGAATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               508-621, - strand, RNAz p=0.642901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               508-621, - strand, RNAz p=0.642901

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-776, gnl|bosTau2|chr16 (22149239-22150030)
               

               
               2-776, gnl|Hg17|chr1 (11138616-11137792)
               

               
               2-776, gnl|Mm7|chr4 (147515951-147516819)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-776, gnl|bosTau2|chr16 (22149239-22150030)
               

               
               2-776, gnl|Hg17|chr1 (11138616-11137792)
               

               
               2-776, gnl|Mm7|chr4 (147515951-147516819)

	2-776, gnl\|bosTau2\|chr16 (22149239-22150030)
	2-776, gnl\|Hg17\|chr1 (11138616-11137792)
	2-776, gnl\|Mm7\|chr4 (147515951-147516819)