Spl1-SPL01G030069
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTACAAGAACCTGGAGGAGTACCACCTGGGCATCGGCATCACTTTCATCGACATGAGTG TGGGCAACGTGAAGGAGGCAGCGGACCGGCGCAGCTTCGACCTCACCACCCCCTACCGCA TCTTCAGCTTCTCGGCCGAATCAGAGCTGGAGAAGGAGCAGTGGCTGGAGGCCATGCAGG GAGCCATTGCGGAGGCCCTGTCTACCTCAGAGGTGGCTGAGCGCATCTGGGCCGTGGCCC CCAACAGATTCTGTGCTGACTGCGAGGCGGCCCAGCCCGACTGGGCCTCCATCAACCTCT GCGTCGTCATCTGCAAGCGCTGCGCAGGTGCGTGGGCGCGGGGCCGGGGTGCTGGAAGAT GGGCCTCCTGGCTGCCTGCAGGGACGGGGGAAAGGCAGTAACAGCATCGTTTATGAAGCT GCGCCTGGGCACCAAGCCTTTCCCACCCTGAGTAACCTGCAAGGCAGGGGTTCAATTTGT CACGAGTCGGGACCCCGAGGCACAGAGAGGGAAAATGGCTCCTCAGGGTCACCTGGTAAG TGAGTGAGTCTGGATTTGAACTCAGGCCTGTGGGCGTCCAGCGCCTCTGTCACCTCAGGG AGCGCAAGGAGGCCAGGTCAGGCAGGGCTTTGCACGCAGAGGGAGGCGCTGGTGATTCAT CGGAAGGGCGTGGGAGGCAGAGTTGGGAGGGCCGCTGTCAGATTTGGGCTTCAGGCGCTG GCCGAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTACAAGAACCTGGAGGAGTACCACCTGGGCATCGGCATCACTTTCATCGACATGAGTG TGGGCAACGTGAAGGAGGCAGCGGACCGGCGCAGCTTCGACCTCACCACCCCCTACCGCA TCTTCAGCTTCTCGGCCGAATCAGAGCTGGAGAAGGAGCAGTGGCTGGAGGCCATGCAGG GAGCCATTGCGGAGGCCCTGTCTACCTCAGAGGTGGCTGAGCGCATCTGGGCCGTGGCCC CCAACAGATTCTGTGCTGACTGCGAGGCGGCCCAGCCCGACTGGGCCTCCATCAACCTCT GCGTCGTCATCTGCAAGCGCTGCGCAGGTGCGTGGGCGCGGGGCCGGGGTGCTGGAAGAT GGGCCTCCTGGCTGCCTGCAGGGACGGGGGAAAGGCAGTAACAGCATCGTTTATGAAGCT GCGCCTGGGCACCAAGCCTTTCCCACCCTGAGTAACCTGCAAGGCAGGGGTTCAATTTGT CACGAGTCGGGACCCCGAGGCACAGAGAGGGAAAATGGCTCCTCAGGGTCACCTGGTAAG TGAGTGAGTCTGGATTTGAACTCAGGCCTGTGGGCGTCCAGCGCCTCTGTCACCTCAGGG AGCGCAAGGAGGCCAGGTCAGGCAGGGCTTTGCACGCAGAGGGAGGCGCTGGTGATTCAT CGGAAGGGCGTGGGAGGCAGAGTTGGGAGGGCCGCTGTCAGATTTGGGCTTCAGGCGCTG GCCGAAGC |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 144-303, - strand, RNAz p=0.991191 | |
| 184-295, + strand, RNAz p=0.904406 | |
| 523-623, + strand, RNAz p=0.549728 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 144-303, - strand, RNAz p=0.991191 | |
| 184-295, + strand, RNAz p=0.904406 | |
| 523-623, + strand, RNAz p=0.549728 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 106-329, gnl|bosTau2|chr15 (29372790-29373014) | |
| 106-329, gnl|canFam2|chr21 (28514097-28513850) | |
| 106-329, gnl|danRer3|chrNA (217696714-217696510) | |
| 106-329, gnl|dasNov1|scaffold_1728 (59223-59427) | |
| 106-329, gnl|echTel1|scaffold_270700 (3926-3722) | |
| 106-329, gnl|fr1|chrUn (258346563-258346768) | |
| 106-329, gnl|galGal2|chrUn (112828220-112827974) | |
| 106-329, gnl|hg17|chr11 (72095851-72096101) | |
| 106-329, gnl|Hg17|chr11 (72096086-72095866) | |
| 106-329, gnl|loxAfr1|scaffold_100897 (822-576) | |
| 106-329, gnl|mm7|chr7 (97436512-97436281) | |
| 106-329, gnl|Mm7|chr7 (97436294-97436515) | |
| 106-329, gnl|monDom2|scaffold_74 (5351704-5351476) | |
| 106-329, gnl|oryCun1|scaffold_191723 (37207-37003) | |
| 106-329, gnl|panTro1|chr9 (73370342-73370592) | |
| 106-329, gnl|rheMac2|chr14 (70794370-70794620) | |
| 106-329, gnl|rn3|chr1 (158968749-158968516) | |
| 106-329, gnl|tetNig1|chrUn_random (47447107-47446881) | |
| 106-329, gnl|xenTro1|scaffold_2013 (34488-34263) | |
| 341-675, gnl|bosTau2|chr15 (29373050-29373396) | |
| 341-675, gnl|Hg17|chr11 (72095826-72095460) | |
| 341-675, gnl|Mm7|chr7 (97436544-97436842) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 106-329, gnl|bosTau2|chr15 (29372790-29373014) | |
| 106-329, gnl|canFam2|chr21 (28514097-28513850) | |
| 106-329, gnl|danRer3|chrNA (217696714-217696510) | |
| 106-329, gnl|dasNov1|scaffold_1728 (59223-59427) | |
| 106-329, gnl|echTel1|scaffold_270700 (3926-3722) | |
| 106-329, gnl|fr1|chrUn (258346563-258346768) | |
| 106-329, gnl|galGal2|chrUn (112828220-112827974) | |
| 106-329, gnl|hg17|chr11 (72095851-72096101) | |
| 106-329, gnl|Hg17|chr11 (72096086-72095866) | |
| 106-329, gnl|loxAfr1|scaffold_100897 (822-576) | |
| 106-329, gnl|mm7|chr7 (97436512-97436281) | |
| 106-329, gnl|Mm7|chr7 (97436294-97436515) | |
| 106-329, gnl|monDom2|scaffold_74 (5351704-5351476) | |
| 106-329, gnl|oryCun1|scaffold_191723 (37207-37003) | |
| 106-329, gnl|panTro1|chr9 (73370342-73370592) | |
| 106-329, gnl|rheMac2|chr14 (70794370-70794620) | |
| 106-329, gnl|rn3|chr1 (158968749-158968516) | |
| 106-329, gnl|tetNig1|chrUn_random (47447107-47446881) | |
| 106-329, gnl|xenTro1|scaffold_2013 (34488-34263) | |
| 341-675, gnl|bosTau2|chr15 (29373050-29373396) | |
| 341-675, gnl|Hg17|chr11 (72095826-72095460) | |
| 341-675, gnl|Mm7|chr7 (97436544-97436842) |