Spl1-SPL01G050101
|
CTTCTGGCCCCAGGGTTGCGATGGGGGAGGTGGGGACAGTGGTGGAAGTCAGCGGGCTGA
CCCCCGATGTCCCCGAGGAGCTGCTCATGCTCTACTTTGAGAACCGCAGGAGCTCTGGGG
GTGGACCTGTGTTGAGCTGGCAGAGACTTGGCCCTGGGGGCATACTCAGCTTTCGGGAGC
CTGCAGATGCAGCGAGGGTCCTGGCCCAGGAGGAGCACACTCTGTGCGGTGCCCGGCTGA
GCCTGCGGCCCGCCCCGCCCCGCGCCCCTGCGCGCCTGCTCCTCCAGGCACTGCCTCCCG
GCCTCGCACCCCAGCGCCTGGAGCAGCACGTCCAAGCCTTGCTTCGTGCCACAGGTCACC
CTGAGCAGCCCTGCCGTGCCCTGGCCAGTCCCCGACCAGACCGGGCCCTGGTCCAGCTGC
CCAAGCCCCTTTCTGAGGCAGAGTTCCGCGTGCTGGCGGAGCGGGCGCGGGCCGTGGGCC
TGGAGGGGGCGGAGGTATCCCTGGCCTGGGTGCCCCAGGCCCGAGCGGTGCGTGTAGTGG
GGGGCAGCCCCGCTGCGGACCCGCTGCTGTTGGAGCTGTACCTGGAGAACGAGCGCCGCA
GTGGTGGGGGGCCCCTGGAAGGCTTGCGCAGGCTGCCGGGGACCCTGGGCACCGTCGCCT
CCTTCCAGCAGTGGCAGGCGGCTGAACGGGTGCTGCAGCGGGACCACCGGCTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTCTGGCCCCAGGGTTGCGATGGGGGAGGTGGGGACAGTGGTGGAAGTCAGCGGGCTGA
CCCCCGATGTCCCCGAGGAGCTGCTCATGCTCTACTTTGAGAACCGCAGGAGCTCTGGGG
GTGGACCTGTGTTGAGCTGGCAGAGACTTGGCCCTGGGGGCATACTCAGCTTTCGGGAGC
CTGCAGATGCAGCGAGGGTCCTGGCCCAGGAGGAGCACACTCTGTGCGGTGCCCGGCTGA
GCCTGCGGCCCGCCCCGCCCCGCGCCCCTGCGCGCCTGCTCCTCCAGGCACTGCCTCCCG
GCCTCGCACCCCAGCGCCTGGAGCAGCACGTCCAAGCCTTGCTTCGTGCCACAGGTCACC
CTGAGCAGCCCTGCCGTGCCCTGGCCAGTCCCCGACCAGACCGGGCCCTGGTCCAGCTGC
CCAAGCCCCTTTCTGAGGCAGAGTTCCGCGTGCTGGCGGAGCGGGCGCGGGCCGTGGGCC
TGGAGGGGGCGGAGGTATCCCTGGCCTGGGTGCCCCAGGCCCGAGCGGTGCGTGTAGTGG
GGGGCAGCCCCGCTGCGGACCCGCTGCTGTTGGAGCTGTACCTGGAGAACGAGCGCCGCA
GTGGTGGGGGGCCCCTGGAAGGCTTGCGCAGGCTGCCGGGGACCCTGGGCACCGTCGCCT
CCTTCCAGCAGTGGCAGGCGGCTGAACGGGTGCTGCAGCGGGACCACCGGCTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
179-441, gnl|bosTau2|chr14 (233747-234009) |
|
179-441, gnl|canFam2|chr13 (40538710-40538993) |
|
179-441, gnl|echTel1|scaffold_322222 (638-367) |
|
179-441, gnl|fr1|chrUn (21062879-21063143) |
|
179-441, gnl|hg17|chr8 (145131874-145132162) |
|
179-441, gnl|Hg17|chr8 (145132139-145131877) |
|
179-441, gnl|loxAfr1|scaffold_197317 (304-30) |
|
179-441, gnl|mm7|chr15 (76325270-76325565) |
|
179-441, gnl|Mm7|chr15 (76325546-76325284) |
|
179-441, gnl|monDom2|scaffold_79 (2039095-2039370) |
|
179-441, gnl|rn3|chr7 (114306800-114307094) |
|
179-441, gnl|xenTro1|scaffold_6423 (9731-10005) |
| |
|
450-675, gnl|bosTau2|chr14 (234089-234314) |
|
450-675, gnl|Hg17|chr8 (145131796-145131571) |
|
450-675, gnl|Mm7|chr15 (76325183-76324958) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
179-441, gnl|bosTau2|chr14 (233747-234009) |
|
179-441, gnl|canFam2|chr13 (40538710-40538993) |
|
179-441, gnl|echTel1|scaffold_322222 (638-367) |
|
179-441, gnl|fr1|chrUn (21062879-21063143) |
|
179-441, gnl|hg17|chr8 (145131874-145132162) |
|
179-441, gnl|Hg17|chr8 (145132139-145131877) |
|
179-441, gnl|loxAfr1|scaffold_197317 (304-30) |
|
179-441, gnl|mm7|chr15 (76325270-76325565) |
|
179-441, gnl|Mm7|chr15 (76325546-76325284) |
|
179-441, gnl|monDom2|scaffold_79 (2039095-2039370) |
|
179-441, gnl|rn3|chr7 (114306800-114307094) |
|
179-441, gnl|xenTro1|scaffold_6423 (9731-10005) |
| |
|
450-675, gnl|bosTau2|chr14 (234089-234314) |
|
450-675, gnl|Hg17|chr8 (145131796-145131571) |
|
450-675, gnl|Mm7|chr15 (76325183-76324958) |
