Non-Coding RNA Search

Spl1-SPL01G070075

Sequence:


               
               CAGCAAAATTCACCGTGCCATCACACCGCACCCCAACAAGAACCCACCCTACCAGTACAG
GCTCCACAGCTACATGCTCAGCCGCAAGATAGCCGAGCTTCGCCACCGCACCATCCAGCT
GCACCGAGAAATCGTCCTGATGAGCAAGTACAGCAACACTGAGATTCATAAAGAAGACCT
CCAGCTGGGAATTGCGCCTTCCTTCATGAGGTTCCAGCCCCGCCAGCGGGAGGAGATTCT
GGAGTGGGAATTTCTGACAGGGAAATACCTGTATTCGGCAGCTGACGGCCAACCCCCCCG
AAGAGGGATGGACTCGGCTCAGAGGGAGGCCTTGGATGACATTGTCATGCAGGTCATGGA
GATGATCAATGCCAATGCCAAGACCAGGGGGCGCATTATTGATTTCAAGGAGATACAGTA
CGGCTATCGCCGGGTGAACCCCATGTATGGGGCCGAGTACATCCTGGACCTCCTGCTTCT
GTACAAGAAGCACAAGGGCAAGAAGATGACAGTGCCTGTGCGGAGGCATGCGTACCTGCA
GCAGACCCTCAGCAAGATCCAGTTTGTGGAGCATGAGGGTTTGGATGCGAAGGAACTGGC
TGACCGGATTAACCAGGAGTCTGGGTCCTTGTCTTTTCTCTCGAACTCCCTGAAGAAGCT
CGTTCCCTTTCAGCTCCCTGGGTCCAAGAACGAGCACAAAGAACCCAAAGAGAAAAAGAT
AAACATACTGATCCCTTTGTCAGGACGTTTCGACATGCTTGTGAGATTCATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAAAATTCACCGTGCCATCACACCGCACCCCAACAAGAACCCACCCTACCAGTACAG
GCTCCACAGCTACATGCTCAGCCGCAAGATAGCCGAGCTTCGCCACCGCACCATCCAGCT
GCACCGAGAAATCGTCCTGATGAGCAAGTACAGCAACACTGAGATTCATAAAGAAGACCT
CCAGCTGGGAATTGCGCCTTCCTTCATGAGGTTCCAGCCCCGCCAGCGGGAGGAGATTCT
GGAGTGGGAATTTCTGACAGGGAAATACCTGTATTCGGCAGCTGACGGCCAACCCCCCCG
AAGAGGGATGGACTCGGCTCAGAGGGAGGCCTTGGATGACATTGTCATGCAGGTCATGGA
GATGATCAATGCCAATGCCAAGACCAGGGGGCGCATTATTGATTTCAAGGAGATACAGTA
CGGCTATCGCCGGGTGAACCCCATGTATGGGGCCGAGTACATCCTGGACCTCCTGCTTCT
GTACAAGAAGCACAAGGGCAAGAAGATGACAGTGCCTGTGCGGAGGCATGCGTACCTGCA
GCAGACCCTCAGCAAGATCCAGTTTGTGGAGCATGAGGGTTTGGATGCGAAGGAACTGGC
TGACCGGATTAACCAGGAGTCTGGGTCCTTGTCTTTTCTCTCGAACTCCCTGAAGAAGCT
CGTTCCCTTTCAGCTCCCTGGGTCCAAGAACGAGCACAAAGAACCCAAAGAGAAAAAGAT
AAACATACTGATCCCTTTGTCAGGACGTTTCGACATGCTTGTGAGATTCATGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8CEL5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CEL5_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               280-519, - strand, RNAz p=0.893435
               

               
               600-719, - strand, RNAz p=0.882682

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-519, - strand, RNAz p=0.893435
               

               
               600-719, - strand, RNAz p=0.882682

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               605-769, - strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               605-769, - strand, RNAmicro p=1

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-774, gnl|bosTau2|chr21 (2823161-2823934)
               

               
               1-774, gnl|Hg17|chr15 (99536643-99535870)
               

               
               1-774, gnl|Mm7|chr7 (62028864-62029637)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-774, gnl|bosTau2|chr21 (2823161-2823934)
               

               
               1-774, gnl|Hg17|chr15 (99536643-99535870)
               

               
               1-774, gnl|Mm7|chr7 (62028864-62029637)

	280-519, - strand, RNAz p=0.893435
	600-719, - strand, RNAz p=0.882682

	1-774, gnl\|bosTau2\|chr21 (2823161-2823934)
	1-774, gnl\|Hg17\|chr15 (99536643-99535870)
	1-774, gnl\|Mm7\|chr7 (62028864-62029637)