Non-Coding RNA Search

Spl1-SPL01G090080

Sequence:


               
               ggatgtgggttcgatccctggccttgctcactgggttaagggtccagcgatgccttgagt
tgtggttgtagatcacagatgtagctctgattcgaccgctagcctgggaacttccatacg
ccacaggtgcagtcctaaaaTGCTTTAAAAAGAAAAAGAAAAAGAAAAGCAAAAAAAGAA
AAAAGAAAGTTCTTCTGTGTGTCCTCAACTGACCCTGAGGTTTGAACGTATCCACTGGCT
TCAGTCAGCGAGGGGTTTAGATTGCTGGACTTGCCCGTGCTTCCGACTTGGGGCCGGCGA
GGCAGGGAGGCCTCTTAGCATCACAGGCAGCTGTCTGCACACTGCAGCCGGGAGCCCCTG
CGGTCTTACTCACGCCACTGGTGAGCAGCCTTGAGGAACACGACATTGGGGAAGAGGCAC
AATGAACAGCATTTTCCAGCAAGGGTGGTTTCAGCTTTGCCCCTGGGGTTAGACGATGGG
CTGCCCCAGGGTAGGGCCTCTAACCCCGGTGCCTGTCACGGAGCTGACACTCAGTAGGAA
CTCAATAAATCTTTGGTGACTACATGAATTTTTCTCCCAGTGCATGGTCCCCAGGTGGAT
GCTTCCGGCTCACAAGGGGCTGTGGTCATAACTTTGCAACTCTTAGACACCCCGGTACCT
CGAGGGCCCTCCCAGCCCGGACACAGTGTGATCCTTGATTCATGCCGTGTCCCCGCCCTC
GGCAAACAGCAGCCAGCTCCAACTGCTCATAAATTTCCCGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ggatgtgggttcgatccctggccttgctcactgggttaagggtccagcgatgccttgagt
tgtggttgtagatcacagatgtagctctgattcgaccgctagcctgggaacttccatacg
ccacaggtgcagtcctaaaaTGCTTTAAAAAGAAAAAGAAAAAGAAAAGCAAAAAAAGAA
AAAAGAAAGTTCTTCTGTGTGTCCTCAACTGACCCTGAGGTTTGAACGTATCCACTGGCT
TCAGTCAGCGAGGGGTTTAGATTGCTGGACTTGCCCGTGCTTCCGACTTGGGGCCGGCGA
GGCAGGGAGGCCTCTTAGCATCACAGGCAGCTGTCTGCACACTGCAGCCGGGAGCCCCTG
CGGTCTTACTCACGCCACTGGTGAGCAGCCTTGAGGAACACGACATTGGGGAAGAGGCAC
AATGAACAGCATTTTCCAGCAAGGGTGGTTTCAGCTTTGCCCCTGGGGTTAGACGATGGG
CTGCCCCAGGGTAGGGCCTCTAACCCCGGTGCCTGTCACGGAGCTGACACTCAGTAGGAA
CTCAATAAATCTTTGGTGACTACATGAATTTTTCTCCCAGTGCATGGTCCCCAGGTGGAT
GCTTCCGGCTCACAAGGGGCTGTGGTCATAACTTTGCAACTCTTAGACACCCCGGTACCT
CGAGGGCCCTCCCAGCCCGGACACAGTGTGATCCTTGATTCATGCCGTGTCCCCGCCCTC
GGCAAACAGCAGCCAGCTCCAACTGCTCATAAATTTCCCGCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               641-759, - strand, RNAz p=0.757739

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               641-759, - strand, RNAz p=0.757739

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               444-763, gnl|bosTau2|chr11 (34145748-34145439)
               

               
               444-763, gnl|canFam2|chr17 (42318738-42318322)
               

               
               444-763, gnl|hg17|chr2 (85919381-85919777)
               

               
               444-763, gnl|Hg17|chr2 (85919380-85919676)
               

               
               444-763, gnl|mm7|chr6 (72227604-72227276)
               

               
               444-763, gnl|Mm7|chr6 (72227634-72227373)
               

               
               444-763, gnl|oryCun1|scaffold_191940 (555-942)
               

               
               444-763, gnl|panTro1|chr12 (88793732-88794128)
               

               
               444-763, gnl|rheMac2|chr13 (86358850-86359246)
               

               
               444-763, gnl|rn3|chr4 (105750870-105750543)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               444-763, gnl|bosTau2|chr11 (34145748-34145439)
               

               
               444-763, gnl|canFam2|chr17 (42318738-42318322)
               

               
               444-763, gnl|hg17|chr2 (85919381-85919777)
               

               
               444-763, gnl|Hg17|chr2 (85919380-85919676)
               

               
               444-763, gnl|mm7|chr6 (72227604-72227276)
               

               
               444-763, gnl|Mm7|chr6 (72227634-72227373)
               

               
               444-763, gnl|oryCun1|scaffold_191940 (555-942)
               

               
               444-763, gnl|panTro1|chr12 (88793732-88794128)
               

               
               444-763, gnl|rheMac2|chr13 (86358850-86359246)
               

               
               444-763, gnl|rn3|chr4 (105750870-105750543)

	444-763, gnl\|bosTau2\|chr11 (34145748-34145439)
	444-763, gnl\|canFam2\|chr17 (42318738-42318322)
	444-763, gnl\|hg17\|chr2 (85919381-85919777)
	444-763, gnl\|Hg17\|chr2 (85919380-85919676)
	444-763, gnl\|mm7\|chr6 (72227604-72227276)
	444-763, gnl\|Mm7\|chr6 (72227634-72227373)
	444-763, gnl\|oryCun1\|scaffold_191940 (555-942)
	444-763, gnl\|panTro1\|chr12 (88793732-88794128)
	444-763, gnl\|rheMac2\|chr13 (86358850-86359246)
	444-763, gnl\|rn3\|chr4 (105750870-105750543)