Non-Coding RNA Search

Spl1-SPL01G100093

Sequence:


               
               GAGAAAAAAAAGGGAAGCGAGACTTTTGTCAGCTCTAGAAATTCAAGAGATGCAAAAAAG
AGAGATACGGTTTGGTGGATTTTTACTTGCATTCATGATGAATTTAGTCAGCCTTCCTTT
GCCGACATCAAAATCAAAATAAGAGCCTTGGTCCCCGTTTCTCCCTGCTGGGGCCAGATG
TCTGATGGGAGGAGGTTGGCAGAGGACTTCCAGGAGGCATAATTACCAGAGGCTCAAAGA
GTAATATTGGCATCCCCCTTGGAAAAATCCATCTCGATCAGCCTCAGAAACAACCTCTTG
TCTCTGGAATCTGGAGCAAAGAGAAGGTGAGTTGAAAGGAATCCAGTTGTCTCTTGGTGA
TTAATTCTTCTTCCCGAAAGTAATTCTGGAGTTGGGCATCAATCGAAAACCCAAAAATAA
ATACCTGGGTTGCAATGATATGGCCAGTAAATATTTCTAAAGTCAGGGAATCTGGAAACA
AATATTTTCCCTGATTGATGTTGTCTTCCATACACTGTGAGAAGGAAGCTTTCACAATTA
CCTGGAAAGCTTGACCCCAAAATCTCTATTTTGGCCTAAATCATGCAGTTTTACTGCTTT
GGGCTTCCCAGTTCTCTGAAGGTGCAGAAGCCCTTGTCTTCATTGTGTCAAAGCCTTATA
ACTCACTGCAAATCACACGGAAAATGGACTCTGCTCTCTCTGGATCACCTTCTTTGTAGC
TCCTGATTTGCCCCTCCAGGGGAACCCACGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAAAAAAAGGGAAGCGAGACTTTTGTCAGCTCTAGAAATTCAAGAGATGCAAAAAAG
AGAGATACGGTTTGGTGGATTTTTACTTGCATTCATGATGAATTTAGTCAGCCTTCCTTT
GCCGACATCAAAATCAAAATAAGAGCCTTGGTCCCCGTTTCTCCCTGCTGGGGCCAGATG
TCTGATGGGAGGAGGTTGGCAGAGGACTTCCAGGAGGCATAATTACCAGAGGCTCAAAGA
GTAATATTGGCATCCCCCTTGGAAAAATCCATCTCGATCAGCCTCAGAAACAACCTCTTG
TCTCTGGAATCTGGAGCAAAGAGAAGGTGAGTTGAAAGGAATCCAGTTGTCTCTTGGTGA
TTAATTCTTCTTCCCGAAAGTAATTCTGGAGTTGGGCATCAATCGAAAACCCAAAAATAA
ATACCTGGGTTGCAATGATATGGCCAGTAAATATTTCTAAAGTCAGGGAATCTGGAAACA
AATATTTTCCCTGATTGATGTTGTCTTCCATACACTGTGAGAAGGAAGCTTTCACAATTA
CCTGGAAAGCTTGACCCCAAAATCTCTATTTTGGCCTAAATCATGCAGTTTTACTGCTTT
GGGCTTCCCAGTTCTCTGAAGGTGCAGAAGCCCTTGTCTTCATTGTGTCAAAGCCTTATA
ACTCACTGCAAATCACACGGAAAATGGACTCTGCTCTCTCTGGATCACCTTCTTTGTAGC
TCCTGATTTGCCCCTCCAGGGGAACCCACGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               84-203, + strand, RNAz p=0.649361

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-203, + strand, RNAz p=0.649361

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-519, gnl|bosTau2|chr17 (33882994-33882474)
               

               
               4-519, gnl|Hg17|chr12 (115214059-115213545)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-519, gnl|bosTau2|chr17 (33882994-33882474)
               

               
               4-519, gnl|Hg17|chr12 (115214059-115213545)

	4-519, gnl\|bosTau2\|chr17 (33882994-33882474)
	4-519, gnl\|Hg17\|chr12 (115214059-115213545)