Non-Coding RNA Search

Spl1-SPL01H050053

Sequence:


               
               ACGCAAGATGGCGGAGCTGGAGGAGGTGACTCTGGACGGGAAGCCTCTTCAGGCGCTGCG
GGTGACCGACCTGACGGCCGCACTGGAACAGCGAGGCCTAGCCAAGAGCGGGCAGAAGAG
TGCCCTGGTCAAGCGGCTCAAAGGGGCTCTAATGCTAGAAAATTTACAGAAACACTCAAC
ACCCCATGCTGCATTCCAGCCAAATTCCCAGATTGGCGAGGAAATGAGCCAGAACAGTTT
CATAAAGCAGTATCTGGAAAAGCAACAGGAGCTGCTTAGGCAGCGTCTAGAACGTGAAGC
TCGAGAAGCTGCAGAACTTGAAGGTAAGCCCAGACTGTCACTTCTTACAAGGAATTCTTC
CTTCTTATTCCTGTCACTGAGTAGATGGGCTTGTTTCACTAGGCAGTTTCAGGAATATAA
ATCAGGCTGAGTCTGCTACTTTATTTGCTTTGGTAGTTTACAGAGCCAAGTGAATTAGTT
ACTATTTACCTTTTGTCAGGAAAGAAGACACTTAATTTGACTCTCTTGATAGAGGAGGAT
TCCTGCCAACAGATTAAGCTACCCTTTGGGGGAACTAGAGGCCTAATTCTAGGGAGTTTT
CTCTATGTACAGTGCTCTTTTTAGTATATACTCTGTATCCATGACTTTGCCTGACCTCCT
TCACTCTTCTACATATTCCCACATGCTGAGCCCTTCACTCCCTCCCTGCCCCGACCCAAT
CTGTACTTTGCAGAAGCTTCAGCTGAGTCGGAGGACGAGATAATCCATCCCGAGGGAGTG
TCTTCCCTGCTGCCTCCTGACTTTCAGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCAAGATGGCGGAGCTGGAGGAGGTGACTCTGGACGGGAAGCCTCTTCAGGCGCTGCG
GGTGACCGACCTGACGGCCGCACTGGAACAGCGAGGCCTAGCCAAGAGCGGGCAGAAGAG
TGCCCTGGTCAAGCGGCTCAAAGGGGCTCTAATGCTAGAAAATTTACAGAAACACTCAAC
ACCCCATGCTGCATTCCAGCCAAATTCCCAGATTGGCGAGGAAATGAGCCAGAACAGTTT
CATAAAGCAGTATCTGGAAAAGCAACAGGAGCTGCTTAGGCAGCGTCTAGAACGTGAAGC
TCGAGAAGCTGCAGAACTTGAAGGTAAGCCCAGACTGTCACTTCTTACAAGGAATTCTTC
CTTCTTATTCCTGTCACTGAGTAGATGGGCTTGTTTCACTAGGCAGTTTCAGGAATATAA
ATCAGGCTGAGTCTGCTACTTTATTTGCTTTGGTAGTTTACAGAGCCAAGTGAATTAGTT
ACTATTTACCTTTTGTCAGGAAAGAAGACACTTAATTTGACTCTCTTGATAGAGGAGGAT
TCCTGCCAACAGATTAAGCTACCCTTTGGGGGAACTAGAGGCCTAATTCTAGGGAGTTTT
CTCTATGTACAGTGCTCTTTTTAGTATATACTCTGTATCCATGACTTTGCCTGACCTCCT
TCACTCTTCTACATATTCCCACATGCTGAGCCCTTCACTCCCTCCCTGCCCCGACCCAAT
CTGTACTTTGCAGAAGCTTCAGCTGAGTCGGAGGACGAGATAATCCATCCCGAGGGAGTG
TCTTCCCTGCTGCCTCCTGACTTTCAGAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26376388|dbj|BAB28171.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26376388|dbj|BAB28171.2|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               29-146, + strand, RNAz p=0.738078
               

               
               209-367, - strand, RNAz p=0.995313
               

               
               663-811, - strand, RNAz p=0.995484

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-146, + strand, RNAz p=0.738078
               

               
               209-367, - strand, RNAz p=0.995313
               

               
               663-811, - strand, RNAz p=0.995484

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF124726, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF124726, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-146, gnl|bosTau2|chr10 (13964067-13964212)
               

               
               1-146, gnl|canFam2|chr8 (6408481-6408674)
               

               
               1-146, gnl|danRer3|chr2 (34157341-34157156)
               

               
               1-146, gnl|dasNov1|scaffold_2820 (62729-62923)
               

               
               1-146, gnl|echTel1|scaffold_319423 (49560-49366)
               

               
               1-146, gnl|fr1|chrUn (36810152-36809976)
               

               
               1-146, gnl|hg17|chr14 (22633996-22634189)
               

               
               1-146, gnl|Hg17|chr14 (22634168-22634023)
               

               
               1-146, gnl|loxAfr1|scaffold_7132 (52422-52616)
               

               
               1-146, gnl|mm7|chr14 (49553375-49553568)
               

               
               1-146, gnl|Mm7|chr14 (49553547-49553402)
               

               
               1-146, gnl|monDom2|scaffold_12 (26721148-26720954)
               

               
               1-146, gnl|oryCun1|scaffold_201358 (10210-10403)
               

               
               1-146, gnl|panTro1|chr15_random (3465898-3466091)
               

               
               1-146, gnl|rheMac2|chr7 (85925090-85925283)
               

               
               1-146, gnl|rn3|chr15 (32780072-32780265)
               

               
               1-146, gnl|tetNig1|chrUn_random (21365142-21365286)
               

               
               1-146, gnl|xenTro1|scaffold_1223 (150258-150113)
               


               
               209-811, gnl|bosTau2|chr10 (13967518-13968133)
               

               
               209-811, gnl|Hg17|chr14 (22629685-22629073)
               

               
               209-811, gnl|Mm7|chr14 (49546289-49545719)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-146, gnl|bosTau2|chr10 (13964067-13964212)
               

               
               1-146, gnl|canFam2|chr8 (6408481-6408674)
               

               
               1-146, gnl|danRer3|chr2 (34157341-34157156)
               

               
               1-146, gnl|dasNov1|scaffold_2820 (62729-62923)
               

               
               1-146, gnl|echTel1|scaffold_319423 (49560-49366)
               

               
               1-146, gnl|fr1|chrUn (36810152-36809976)
               

               
               1-146, gnl|hg17|chr14 (22633996-22634189)
               

               
               1-146, gnl|Hg17|chr14 (22634168-22634023)
               

               
               1-146, gnl|loxAfr1|scaffold_7132 (52422-52616)
               

               
               1-146, gnl|mm7|chr14 (49553375-49553568)
               

               
               1-146, gnl|Mm7|chr14 (49553547-49553402)
               

               
               1-146, gnl|monDom2|scaffold_12 (26721148-26720954)
               

               
               1-146, gnl|oryCun1|scaffold_201358 (10210-10403)
               

               
               1-146, gnl|panTro1|chr15_random (3465898-3466091)
               

               
               1-146, gnl|rheMac2|chr7 (85925090-85925283)
               

               
               1-146, gnl|rn3|chr15 (32780072-32780265)
               

               
               1-146, gnl|tetNig1|chrUn_random (21365142-21365286)
               

               
               1-146, gnl|xenTro1|scaffold_1223 (150258-150113)
               


               
               209-811, gnl|bosTau2|chr10 (13967518-13968133)
               

               
               209-811, gnl|Hg17|chr14 (22629685-22629073)
               

               
               209-811, gnl|Mm7|chr14 (49546289-49545719)

	29-146, + strand, RNAz p=0.738078
	209-367, - strand, RNAz p=0.995313
	663-811, - strand, RNAz p=0.995484

	1-146, gnl\|bosTau2\|chr10 (13964067-13964212)
	1-146, gnl\|canFam2\|chr8 (6408481-6408674)
	1-146, gnl\|danRer3\|chr2 (34157341-34157156)
	1-146, gnl\|dasNov1\|scaffold_2820 (62729-62923)
	1-146, gnl\|echTel1\|scaffold_319423 (49560-49366)
	1-146, gnl\|fr1\|chrUn (36810152-36809976)
	1-146, gnl\|hg17\|chr14 (22633996-22634189)
	1-146, gnl\|Hg17\|chr14 (22634168-22634023)
	1-146, gnl\|loxAfr1\|scaffold_7132 (52422-52616)
	1-146, gnl\|mm7\|chr14 (49553375-49553568)
	1-146, gnl\|Mm7\|chr14 (49553547-49553402)
	1-146, gnl\|monDom2\|scaffold_12 (26721148-26720954)
	1-146, gnl\|oryCun1\|scaffold_201358 (10210-10403)
	1-146, gnl\|panTro1\|chr15_random (3465898-3466091)
	1-146, gnl\|rheMac2\|chr7 (85925090-85925283)
	1-146, gnl\|rn3\|chr15 (32780072-32780265)
	1-146, gnl\|tetNig1\|chrUn_random (21365142-21365286)
	1-146, gnl\|xenTro1\|scaffold_1223 (150258-150113)

	209-811, gnl\|bosTau2\|chr10 (13967518-13968133)
	209-811, gnl\|Hg17\|chr14 (22629685-22629073)
	209-811, gnl\|Mm7\|chr14 (49546289-49545719)