Non-Coding RNA Search

Spl1-SPL01H050059

Sequence:


               
               CTGCCTCTGAAATGAGTTGTAACGTTGCACACAAAAGGGGTCACTACATTGTATGCTTGT
GTAACCTTTGAATACTTAAAGATAACTAAAACCTAAAGTACTTTAAGGTAGCAAATCGAA
AATCTAAAATACAGCAAATCCAGACTTCAGAGTTTAAAAACCAACAAACCAAAACCCCCC
TACTGGTTTCTGCGTGGTAAAATGAGGATAACAGTAGTGAGTACCCACAGGGATGTCAGG
AGGACTAGTGACAAGGCTGCTTAGCTCAGGGCCTGGCGCAGAGTCAGTGCTCAGCACCCG
TAGGTTGGTTGTTGACAAGGTGCAGCGGCTGATCCTGTGGTGCGTCTGCTGTGACTCAGC
CTGCTCGAACCCGCTGGCTCCTCTGCCTGAGAATAAAACTTGTGAGCATCCCTCACTCCC
CAAGCTCTTTGGTCCCTGAGAGAACGTGCACCTTGGCAAATGTGGTTCTGCAGTTTACAT
TTATTCCTGACCTTTTTTTGACCCTTTAATCCTGTATTCTCTTCTGAATCAGGATCTGTA
GAGGTTTTGTCCTAAGGTCATAAAAGGATTTCCTTACTTCCCTTAGGACATGCTAGTCAA
CTATCCAGAACATGCTGTGGTTTCCAAGTGACTAAACTCTGGTGCCACTTCCACCCTGAC
CCCCTCACCTTGGAAGTGCCTCCTGGCACTTGTACACAGCCCATTGTTTTAGTTCTTTGG
ATGTTTGTTTTCTTTGCCAGAGTGTGGGCTTCTTGAGGGCAGAGACTGAGCCTTTCCAGG
TTCTGGTAAGTACCTAATTCATTTAGGTACTGTAGTACTTCATCTGGTATCTTACATAGA
GTAGATATTCCAAAATATTTGCTGAACTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTCTGAAATGAGTTGTAACGTTGCACACAAAAGGGGTCACTACATTGTATGCTTGT
GTAACCTTTGAATACTTAAAGATAACTAAAACCTAAAGTACTTTAAGGTAGCAAATCGAA
AATCTAAAATACAGCAAATCCAGACTTCAGAGTTTAAAAACCAACAAACCAAAACCCCCC
TACTGGTTTCTGCGTGGTAAAATGAGGATAACAGTAGTGAGTACCCACAGGGATGTCAGG
AGGACTAGTGACAAGGCTGCTTAGCTCAGGGCCTGGCGCAGAGTCAGTGCTCAGCACCCG
TAGGTTGGTTGTTGACAAGGTGCAGCGGCTGATCCTGTGGTGCGTCTGCTGTGACTCAGC
CTGCTCGAACCCGCTGGCTCCTCTGCCTGAGAATAAAACTTGTGAGCATCCCTCACTCCC
CAAGCTCTTTGGTCCCTGAGAGAACGTGCACCTTGGCAAATGTGGTTCTGCAGTTTACAT
TTATTCCTGACCTTTTTTTGACCCTTTAATCCTGTATTCTCTTCTGAATCAGGATCTGTA
GAGGTTTTGTCCTAAGGTCATAAAAGGATTTCCTTACTTCCCTTAGGACATGCTAGTCAA
CTATCCAGAACATGCTGTGGTTTCCAAGTGACTAAACTCTGGTGCCACTTCCACCCTGAC
CCCCTCACCTTGGAAGTGCCTCCTGGCACTTGTACACAGCCCATTGTTTTAGTTCTTTGG
ATGTTTGTTTTCTTTGCCAGAGTGTGGGCTTCTTGAGGGCAGAGACTGAGCCTTTCCAGG
TTCTGGTAAGTACCTAATTCATTTAGGTACTGTAGTACTTCATCTGGTATCTTACATAGA
GTAGATATTCCAAAATATTTGCTGAACTGGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               713-832, + strand, RNAz p=0.78818

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               713-832, + strand, RNAz p=0.78818

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               674-870, gnl|bosTau2|chr8 (32692480-32692674)
               

               
               674-870, gnl|canFam2|chr11 (57839463-57839789)
               

               
               674-870, gnl|dasNov1|scaffold_6854 (50280-50041)
               

               
               674-870, gnl|echTel1|scaffold_314194 (4955-5280)
               

               
               674-870, gnl|hg17|chr9 (97316000-97316334)
               

               
               674-870, gnl|Hg17|chr9 (97316215-97316394)
               

               
               674-870, gnl|loxAfr1|scaffold_211 (46199-46531)
               

               
               674-870, gnl|mm7|chr4 (46031218-46031526)
               

               
               674-870, gnl|oryCun1|scaffold_201566 (53420-53147)
               

               
               674-870, gnl|panTro1|chr11 (81533058-81533392)
               

               
               674-870, gnl|rheMac2|chr15 (38747843-38747510)
               

               
               674-870, gnl|rn3|chr5 (62556802-62557051)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               674-870, gnl|bosTau2|chr8 (32692480-32692674)
               

               
               674-870, gnl|canFam2|chr11 (57839463-57839789)
               

               
               674-870, gnl|dasNov1|scaffold_6854 (50280-50041)
               

               
               674-870, gnl|echTel1|scaffold_314194 (4955-5280)
               

               
               674-870, gnl|hg17|chr9 (97316000-97316334)
               

               
               674-870, gnl|Hg17|chr9 (97316215-97316394)
               

               
               674-870, gnl|loxAfr1|scaffold_211 (46199-46531)
               

               
               674-870, gnl|mm7|chr4 (46031218-46031526)
               

               
               674-870, gnl|oryCun1|scaffold_201566 (53420-53147)
               

               
               674-870, gnl|panTro1|chr11 (81533058-81533392)
               

               
               674-870, gnl|rheMac2|chr15 (38747843-38747510)
               

               
               674-870, gnl|rn3|chr5 (62556802-62557051)

	674-870, gnl\|bosTau2\|chr8 (32692480-32692674)
	674-870, gnl\|canFam2\|chr11 (57839463-57839789)
	674-870, gnl\|dasNov1\|scaffold_6854 (50280-50041)
	674-870, gnl\|echTel1\|scaffold_314194 (4955-5280)
	674-870, gnl\|hg17\|chr9 (97316000-97316334)
	674-870, gnl\|Hg17\|chr9 (97316215-97316394)
	674-870, gnl\|loxAfr1\|scaffold_211 (46199-46531)
	674-870, gnl\|mm7\|chr4 (46031218-46031526)
	674-870, gnl\|oryCun1\|scaffold_201566 (53420-53147)
	674-870, gnl\|panTro1\|chr11 (81533058-81533392)
	674-870, gnl\|rheMac2\|chr15 (38747843-38747510)
	674-870, gnl\|rn3\|chr5 (62556802-62557051)