Spl1-SPL01H100100
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTTCCACTCGAGGGCCGATTTGAAGCCCTCGGGAGGTGGGATTTCTCTCCCAGGTTCT GACCTGCCCTCCCCTTTGCCACGTCCAACATCTAGGGATGGGCTTGAAACAGAGTCTGCC ACCTTGGACCCTCAAACCAAAGAGGGGAGACCTCAGGAGGAGATAGATGCCCCAGATTTG AAAGGCCGAGGTGAGACTTCTGAACAGCCAGGGGCCCAAGTCCCTGCCCCACCAAAGACA GAAAGAGACTCACCGGATCCTTCCTGGGCAGCTCTGCCTCCCCACCCAGATGAAGGGGCC CTGCCCGCAGAAAGGGATGTTCCCCCGGTGCCTTCTGGAGGAGAGGTGGTTCTTCCAAAT TACCCCAGGCGGCCAGACCACGCTCCACCGCTGGGTCGCGGGAGGCAAGTGGTCGGGGTG GAGGACGACATCGGTTCCAACACCAAGGTCTTCACGTACAATGCTGCCAACAGGGAGACC TGTGAACACAACCATGAGCGCTGCTCTCGGCATGCCTTCTGCACCGACTATGCCACCGGC TTCTGCTGTCACTGCCAGTCCAGGTTTTATGGGAACGGCAAGCATTGTCTGCCTGAAGGA GCACCTCATCGAGTCAATGGGAAAGTGAGTGGGCACCTCCTTGTGGGCCACACGCCTGTG CACTTCACCGACGTGGACCTGCATGCTTATGTCGTGGGCAATGACGGCAGAGCCTATACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTTCCACTCGAGGGCCGATTTGAAGCCCTCGGGAGGTGGGATTTCTCTCCCAGGTTCT GACCTGCCCTCCCCTTTGCCACGTCCAACATCTAGGGATGGGCTTGAAACAGAGTCTGCC ACCTTGGACCCTCAAACCAAAGAGGGGAGACCTCAGGAGGAGATAGATGCCCCAGATTTG AAAGGCCGAGGTGAGACTTCTGAACAGCCAGGGGCCCAAGTCCCTGCCCCACCAAAGACA GAAAGAGACTCACCGGATCCTTCCTGGGCAGCTCTGCCTCCCCACCCAGATGAAGGGGCC CTGCCCGCAGAAAGGGATGTTCCCCCGGTGCCTTCTGGAGGAGAGGTGGTTCTTCCAAAT TACCCCAGGCGGCCAGACCACGCTCCACCGCTGGGTCGCGGGAGGCAAGTGGTCGGGGTG GAGGACGACATCGGTTCCAACACCAAGGTCTTCACGTACAATGCTGCCAACAGGGAGACC TGTGAACACAACCATGAGCGCTGCTCTCGGCATGCCTTCTGCACCGACTATGCCACCGGC TTCTGCTGTCACTGCCAGTCCAGGTTTTATGGGAACGGCAAGCATTGTCTGCCTGAAGGA GCACCTCATCGAGTCAATGGGAAAGTGAGTGGGCACCTCCTTGTGGGCCACACGCCTGTG CACTTCACCGACGTGGACCTGCATGCTTATGTCGTGGGCAATGACGGCAGAGCCTATACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 143-262, - strand, RNAz p=0.702563 | |
| 151-244, - strand, RNAz p=0.854165 | |
| 281-395, - strand, RNAz p=0.926371 | |
| 315-434, + strand, RNAz p=0.72683 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 143-262, - strand, RNAz p=0.702563 | |
| 151-244, - strand, RNAz p=0.854165 | |
| 281-395, - strand, RNAz p=0.926371 | |
| 315-434, + strand, RNAz p=0.72683 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 34-448, gnl|bosTau2|chr10 (29593068-29593479) | |
| 34-448, gnl|canFam2|chr8 (31291438-31292065) | |
| 34-448, gnl|dasNov1|scaffold_36848 (3472-2831) | |
| 34-448, gnl|echTel1|scaffold_317370 (41671-41042) | |
| 34-448, gnl|hg17|chr14 (51590007-51590658) | |
| 34-448, gnl|Hg17|chr14 (51590491-51590047) | |
| 34-448, gnl|loxAfr1|scaffold_33017 (14617-15253) | |
| 34-448, gnl|mm7|chr14 (17426961-17426325) | |
| 34-448, gnl|Mm7|chr14 (17426486-17426919) | |
| 34-448, gnl|monDom2|scaffold_73 (8256678-8257358) | |
| 34-448, gnl|oryCun1|scaffold_184466 (6363-6900) | |
| 34-448, gnl|panTro1|chr15 (51003303-51003954) | |
| 34-448, gnl|rheMac2|chr7 (115072495-115073146) | |
| 34-448, gnl|rn3|chr15 (4840104-4840702) | |
| 34-448, gnl|xenTro1|scaffold_355 (42046-42671) | |
| 597-719, gnl|bosTau2|chr10 (29606431-29606553) | |
| 597-719, gnl|canFam2|chr8 (31280442-31280608) | |
| 597-719, gnl|danRer3|chr4 (13327560-13327385) | |
| 597-719, gnl|dasNov1|scaffold_62281 (6162-6327) | |
| 597-719, gnl|echTel1|scaffold_317370 (56301-56134) | |
| 597-719, gnl|fr1|chrUn (236166199-236166368) | |
| 597-719, gnl|galGal2|chr5 (54781139-54781283) | |
| 597-719, gnl|hg17|chr14 (51578675-51578841) | |
| 597-719, gnl|Hg17|chr14 (51578820-51578698) | |
| 597-719, gnl|loxAfr1|scaffold_33017 (3885-4051) | |
| 597-719, gnl|mm7|chr14 (17436865-17436697) | |
| 597-719, gnl|Mm7|chr14 (17436718-17436840) | |
| 597-719, gnl|monDom2|scaffold_73 (8241077-8241245) | |
| 597-719, gnl|oryCun1|scaffold_147580 (6440-6274) | |
| 597-719, gnl|panTro1|chr15 (50991869-50992035) | |
| 597-719, gnl|rheMac2|chr7 (115061507-115061673) | |
| 597-719, gnl|rn3|chr15 (4831078-4831246) | |
| 597-719, gnl|tetNig1|chr3 (3750434-3750676) | |
| 597-719, gnl|xenTro1|scaffold_355 (39675-39841) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-448, gnl|bosTau2|chr10 (29593068-29593479) | |
| 34-448, gnl|canFam2|chr8 (31291438-31292065) | |
| 34-448, gnl|dasNov1|scaffold_36848 (3472-2831) | |
| 34-448, gnl|echTel1|scaffold_317370 (41671-41042) | |
| 34-448, gnl|hg17|chr14 (51590007-51590658) | |
| 34-448, gnl|Hg17|chr14 (51590491-51590047) | |
| 34-448, gnl|loxAfr1|scaffold_33017 (14617-15253) | |
| 34-448, gnl|mm7|chr14 (17426961-17426325) | |
| 34-448, gnl|Mm7|chr14 (17426486-17426919) | |
| 34-448, gnl|monDom2|scaffold_73 (8256678-8257358) | |
| 34-448, gnl|oryCun1|scaffold_184466 (6363-6900) | |
| 34-448, gnl|panTro1|chr15 (51003303-51003954) | |
| 34-448, gnl|rheMac2|chr7 (115072495-115073146) | |
| 34-448, gnl|rn3|chr15 (4840104-4840702) | |
| 34-448, gnl|xenTro1|scaffold_355 (42046-42671) | |
| 597-719, gnl|bosTau2|chr10 (29606431-29606553) | |
| 597-719, gnl|canFam2|chr8 (31280442-31280608) | |
| 597-719, gnl|danRer3|chr4 (13327560-13327385) | |
| 597-719, gnl|dasNov1|scaffold_62281 (6162-6327) | |
| 597-719, gnl|echTel1|scaffold_317370 (56301-56134) | |
| 597-719, gnl|fr1|chrUn (236166199-236166368) | |
| 597-719, gnl|galGal2|chr5 (54781139-54781283) | |
| 597-719, gnl|hg17|chr14 (51578675-51578841) | |
| 597-719, gnl|Hg17|chr14 (51578820-51578698) | |
| 597-719, gnl|loxAfr1|scaffold_33017 (3885-4051) | |
| 597-719, gnl|mm7|chr14 (17436865-17436697) | |
| 597-719, gnl|Mm7|chr14 (17436718-17436840) | |
| 597-719, gnl|monDom2|scaffold_73 (8241077-8241245) | |
| 597-719, gnl|oryCun1|scaffold_147580 (6440-6274) | |
| 597-719, gnl|panTro1|chr15 (50991869-50992035) | |
| 597-719, gnl|rheMac2|chr7 (115061507-115061673) | |
| 597-719, gnl|rn3|chr15 (4831078-4831246) | |
| 597-719, gnl|tetNig1|chr3 (3750434-3750676) | |
| 597-719, gnl|xenTro1|scaffold_355 (39675-39841) |