Non-Coding RNA Search

Ss1.1-Blo1-PBL010002H09.5

Sequence:


               
               GGCTTTCACATATAAGTCTCTGTACTTGTTTTGCTAGATTTGCACCTGAATATTTCGGGT
TTGTTTGTTTGCTTTGTGATTATTCACTTACTGAGGCCTGCTTCACTCATAGGTTTCCAG
AGGGATTCTAGGCACTTTGTCTGTAGCTCTCAGTCTGTTTCCTCCACGTTTTTGTCATTT
TGTTTAGTGCTTGTGGTGGTTAGGAATTTGTACAAATAAGTTCCCCAAAGTTGATTTGAA
TTAATCTCTTTGTTTTCTTTGTTTCTTTCTGCCTCATAATGGTATTGTTTATCCCTAGGA
ACTGGGCGGAGACCCAGGTCTCTAGGACTCACTGACCAAGCAGATCCTGTGCCCTGAGTC
CCCTCTCTGACATTCCATTCCATTGTCTTTGTGCCAGGAATGGTAGTTCCTTCCAAGACC
AAAATCGTGTGCCATTTTTCTACTCTTGTGTTGACCTGTGGGCAGCCACACACTCTTCAA
ATAGTGCCCCGAGATGAGTATGACAACCCTACGAACAATTCCACGTCCTTGAGAGATGAG
CACAATTACAGTCTGTCCATTCATGAGCTCGGGCCTCAGGAAGAAGAGAGTGCTGGTGTC
TCATTTGAGAGGTCAGTGACCTCCAACCGGCAGACCTGCCAGGTGTTCTTGCGGCTCACC
CTGCACTCCCGAGGCTGCTTCCATGCCTGTATTTCATACCAAAATCAGCCCATCAATAAT
GGCGAATTTGACATTATCGTCCTAAGTGAGAATGAGAGGAATATTGTCGAACGCAATGTA
TCCACCTCAGGAGTGAGCATTTACTTCGAGGCTTATCTGTATAATGCTGCCAACTGTGCC
AGCACGCCGTGGCACCTCCCGCCCATGCACATGAGCTCTGGCCAGCGCCGGCCCTCCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTCACATATAAGTCTCTGTACTTGTTTTGCTAGATTTGCACCTGAATATTTCGGGT
TTGTTTGTTTGCTTTGTGATTATTCACTTACTGAGGCCTGCTTCACTCATAGGTTTCCAG
AGGGATTCTAGGCACTTTGTCTGTAGCTCTCAGTCTGTTTCCTCCACGTTTTTGTCATTT
TGTTTAGTGCTTGTGGTGGTTAGGAATTTGTACAAATAAGTTCCCCAAAGTTGATTTGAA
TTAATCTCTTTGTTTTCTTTGTTTCTTTCTGCCTCATAATGGTATTGTTTATCCCTAGGA
ACTGGGCGGAGACCCAGGTCTCTAGGACTCACTGACCAAGCAGATCCTGTGCCCTGAGTC
CCCTCTCTGACATTCCATTCCATTGTCTTTGTGCCAGGAATGGTAGTTCCTTCCAAGACC
AAAATCGTGTGCCATTTTTCTACTCTTGTGTTGACCTGTGGGCAGCCACACACTCTTCAA
ATAGTGCCCCGAGATGAGTATGACAACCCTACGAACAATTCCACGTCCTTGAGAGATGAG
CACAATTACAGTCTGTCCATTCATGAGCTCGGGCCTCAGGAAGAAGAGAGTGCTGGTGTC
TCATTTGAGAGGTCAGTGACCTCCAACCGGCAGACCTGCCAGGTGTTCTTGCGGCTCACC
CTGCACTCCCGAGGCTGCTTCCATGCCTGTATTTCATACCAAAATCAGCCCATCAATAAT
GGCGAATTTGACATTATCGTCCTAAGTGAGAATGAGAGGAATATTGTCGAACGCAATGTA
TCCACCTCAGGAGTGAGCATTTACTTCGAGGCTTATCTGTATAATGCTGCCAACTGTGCC
AGCACGCCGTGGCACCTCCCGCCCATGCACATGAGCTCTGGCCAGCGCCGGCCCTCCACG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55641059|ref|XP_510065.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55641059|ref|XP_510065.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-393, - strand, RNAz p=0.645926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-393, - strand, RNAz p=0.645926

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               4-567, gnl|bosTau2|chr10 (56288582-56288014)
               


               
               748-899, gnl|bosTau2|chr10 (56287464-56287313)
               

               
               748-899, gnl|canFam2|chr8 (50849514-50849777)
               

               
               748-899, gnl|danRer3|chr15 (29627989-29628240)
               

               
               748-899, gnl|dasNov1|scaffold_3500 (47537-47274)
               

               
               748-899, gnl|echTel1|scaffold_174121 (4676-4413)
               

               
               748-899, gnl|fr1|chrUn (139667077-139666822)
               

               
               748-899, gnl|galGal2|chr5 (34876674-34876930)
               

               
               748-899, gnl|hg17|chr14 (74212149-74212412)
               

               
               748-899, gnl|Hg17|chr14 (74212403-74212252)
               

               
               748-899, gnl|loxAfr1|scaffold_11488 (44116-44379)
               

               
               748-899, gnl|mm7|chr12 (82934233-82934489)
               

               
               748-899, gnl|Mm7|chr12 (82934487-82934336)
               

               
               748-899, gnl|monDom2|scaffold_8 (59872267-59872001)
               

               
               748-899, gnl|oryCun1|scaffold_151058 (3092-2829)
               

               
               748-899, gnl|panTro1|chr15 (74213011-74213274)
               

               
               748-899, gnl|rheMac2|chr7 (137784377-137784640)
               

               
               748-899, gnl|rn3|chr6 (108983332-108983595)
               

               
               748-899, gnl|tetNig1|chr10 (4541389-4541644)
               

               
               748-899, gnl|xenTro1|scaffold_423 (420183-419962)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-567, gnl|bosTau2|chr10 (56288582-56288014)
               


               
               748-899, gnl|bosTau2|chr10 (56287464-56287313)
               

               
               748-899, gnl|canFam2|chr8 (50849514-50849777)
               

               
               748-899, gnl|danRer3|chr15 (29627989-29628240)
               

               
               748-899, gnl|dasNov1|scaffold_3500 (47537-47274)
               

               
               748-899, gnl|echTel1|scaffold_174121 (4676-4413)
               

               
               748-899, gnl|fr1|chrUn (139667077-139666822)
               

               
               748-899, gnl|galGal2|chr5 (34876674-34876930)
               

               
               748-899, gnl|hg17|chr14 (74212149-74212412)
               

               
               748-899, gnl|Hg17|chr14 (74212403-74212252)
               

               
               748-899, gnl|loxAfr1|scaffold_11488 (44116-44379)
               

               
               748-899, gnl|mm7|chr12 (82934233-82934489)
               

               
               748-899, gnl|Mm7|chr12 (82934487-82934336)
               

               
               748-899, gnl|monDom2|scaffold_8 (59872267-59872001)
               

               
               748-899, gnl|oryCun1|scaffold_151058 (3092-2829)
               

               
               748-899, gnl|panTro1|chr15 (74213011-74213274)
               

               
               748-899, gnl|rheMac2|chr7 (137784377-137784640)
               

               
               748-899, gnl|rn3|chr6 (108983332-108983595)
               

               
               748-899, gnl|tetNig1|chr10 (4541389-4541644)
               

               
               748-899, gnl|xenTro1|scaffold_423 (420183-419962)

	4-567, gnl\|bosTau2\|chr10 (56288582-56288014)

	748-899, gnl\|bosTau2\|chr10 (56287464-56287313)
	748-899, gnl\|canFam2\|chr8 (50849514-50849777)
	748-899, gnl\|danRer3\|chr15 (29627989-29628240)
	748-899, gnl\|dasNov1\|scaffold_3500 (47537-47274)
	748-899, gnl\|echTel1\|scaffold_174121 (4676-4413)
	748-899, gnl\|fr1\|chrUn (139667077-139666822)
	748-899, gnl\|galGal2\|chr5 (34876674-34876930)
	748-899, gnl\|hg17\|chr14 (74212149-74212412)
	748-899, gnl\|Hg17\|chr14 (74212403-74212252)
	748-899, gnl\|loxAfr1\|scaffold_11488 (44116-44379)
	748-899, gnl\|mm7\|chr12 (82934233-82934489)
	748-899, gnl\|Mm7\|chr12 (82934487-82934336)
	748-899, gnl\|monDom2\|scaffold_8 (59872267-59872001)
	748-899, gnl\|oryCun1\|scaffold_151058 (3092-2829)
	748-899, gnl\|panTro1\|chr15 (74213011-74213274)
	748-899, gnl\|rheMac2\|chr7 (137784377-137784640)
	748-899, gnl\|rn3\|chr6 (108983332-108983595)
	748-899, gnl\|tetNig1\|chr10 (4541389-4541644)
	748-899, gnl\|xenTro1\|scaffold_423 (420183-419962)