Non-Coding RNA Search

Ss1.1-Blo1-PBL010029F04.5

Sequence:


               
               CATGTGTGTGTATGCCTAACTGCATTGTATGGAAGTGGAATAGCATGATGGGAAAAACAC
ACAGGGCCTGGCCTTTTATGTAGTTTTAAACATTCCATTTGTTATTTTTGGTTGTTATCA
GCCAAAAGATGAGCCTTTTGAAGGCATCAATTACTTGTACATTACTTTATTATGGCTCAT
GAGGGTTTTAATGAACCAGAATGCCAAATGTAAGAAAACCTGCTATCAGTTGAAGTGGGG
GAGTTCCATTTACAGCTTGACTCATGATTTTTATGTTCTCAAAGTCTCCCCCAGTACTCT
CGGCTGAGTTTCTTTAATTGAAGCCATTTAGCTGAGGGGACTGAAGAACTGCTTCTTGGC
TCTTTTAAATGTGAAGAAGTAAAATAACATGTTCCTTTATTAGGCTGACAAGACATAAAG
AGGCATAGATGGAAGGCAGGAACAGTCTCGGCCAGAAAATATATATTTTTTTTCCACCAA
AGCAAATAATAGTTACTTGGTTTAAATTCTAGATTAACAGAGACAGTCCTTGGCTGCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTGTGTGTATGCCTAACTGCATTGTATGGAAGTGGAATAGCATGATGGGAAAAACAC
ACAGGGCCTGGCCTTTTATGTAGTTTTAAACATTCCATTTGTTATTTTTGGTTGTTATCA
GCCAAAAGATGAGCCTTTTGAAGGCATCAATTACTTGTACATTACTTTATTATGGCTCAT
GAGGGTTTTAATGAACCAGAATGCCAAATGTAAGAAAACCTGCTATCAGTTGAAGTGGGG
GAGTTCCATTTACAGCTTGACTCATGATTTTTATGTTCTCAAAGTCTCCCCCAGTACTCT
CGGCTGAGTTTCTTTAATTGAAGCCATTTAGCTGAGGGGACTGAAGAACTGCTTCTTGGC
TCTTTTAAATGTGAAGAAGTAAAATAACATGTTCCTTTATTAGGCTGACAAGACATAAAG
AGGCATAGATGGAAGGCAGGAACAGTCTCGGCCAGAAAATATATATTTTTTTTCCACCAA
AGCAAATAATAGTTACTTGGTTTAAATTCTAGATTAACAGAGACAGTCCTTGGCTGCTAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               83-190, - strand, RNAz p=0.836634
               

               
               231-382, + strand, RNAz p=0.996702

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-190, - strand, RNAz p=0.836634
               

               
               231-382, + strand, RNAz p=0.996702

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               231-382, BP156066 full-length enriched swine cDNA library, adult peripheral 
(dbj|BP156066.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               231-382, BP156066 full-length enriched swine cDNA library, adult peripheral 
(dbj|BP156066.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-540, gnl|bosTau2|chr28 (23216894-23217418)
               

               
               4-540, gnl|Hg17|chr10 (75542869-75543427)
               

               
               4-540, gnl|Mm7|chr14 (18686876-18687364)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-540, gnl|bosTau2|chr28 (23216894-23217418)
               

               
               4-540, gnl|Hg17|chr10 (75542869-75543427)
               

               
               4-540, gnl|Mm7|chr14 (18686876-18687364)

	83-190, - strand, RNAz p=0.836634
	231-382, + strand, RNAz p=0.996702

	4-540, gnl\|bosTau2\|chr28 (23216894-23217418)
	4-540, gnl\|Hg17\|chr10 (75542869-75543427)
	4-540, gnl\|Mm7\|chr14 (18686876-18687364)