Non-Coding RNA Search

Ss1.1-Blo1-PBL010030B09.5

Sequence:


               
               CTACTGGTTTAATATCTAGAAATCAAGGGTAAGGACCAATTACTAGAATTCCACCCTTAA
AGGAATAATTAATAACGATATAACAAATGTACAGCTCTGAACTTCTGAAAAAAAAAGTTT
AATTTAAAAAAATTAAGATCAATAATTGAAAAACAGCCAAAACAGCCATGTCAAGCTGTA
GTAGTCTGTGATCATGGCTGCTTTTTGTGTTGGTCATGGATCGTAATTCTAAATGCTTTA
ATATACAATCATCCATATGAATGCTTTACAGACTCTGTTATCACCTGTAGTTAATGGTGC
CTGTGATACAAATGAACAGGCTGTTCTTTGCTCTTACCTTTATGGTAAATAAACTAGCAT
TCTGGAGTCACAATAATTAAATAAAATGTAAATCCCTAATCTCATTTGGCTTATTTGGAC
CAAGAAAGTTACCCGGCTATTACCTGTCTAGTTCTAATGATTAGTAATGATTTATTGTTC
TTCTTTTTTTATTGTTCCAAAAGTGCTCTGATGTGGTGCCTTGATGTCTAATGAAAAGAA
ATTGGTCTTAAAAAGCTACTCATTGTTTATCCCTACTCTTAGATAACACATTTTTCTTCT
GATAAAATATTTTTCTTATTTATTGTTGAAAACACACACTAAAGACAATAATTCTAATTC
TGGTGCTGTTTTATTTAGTAGTGTTTTATTCCTGGTGCCTGGCTGTCTACCACCATACCT
CAGCACATAACTTTACTCTGAGATAAGCCTCCTCTCCGTTGCTCTCTCTCCCTTGCTTTC
TGTAGTTTGTCTGCAGGAATGCAGGTTTCCACTGAAGAGCGCAGTGGAGTTCTTACTGTG
CCTTTCCGGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACTGGTTTAATATCTAGAAATCAAGGGTAAGGACCAATTACTAGAATTCCACCCTTAA
AGGAATAATTAATAACGATATAACAAATGTACAGCTCTGAACTTCTGAAAAAAAAAGTTT
AATTTAAAAAAATTAAGATCAATAATTGAAAAACAGCCAAAACAGCCATGTCAAGCTGTA
GTAGTCTGTGATCATGGCTGCTTTTTGTGTTGGTCATGGATCGTAATTCTAAATGCTTTA
ATATACAATCATCCATATGAATGCTTTACAGACTCTGTTATCACCTGTAGTTAATGGTGC
CTGTGATACAAATGAACAGGCTGTTCTTTGCTCTTACCTTTATGGTAAATAAACTAGCAT
TCTGGAGTCACAATAATTAAATAAAATGTAAATCCCTAATCTCATTTGGCTTATTTGGAC
CAAGAAAGTTACCCGGCTATTACCTGTCTAGTTCTAATGATTAGTAATGATTTATTGTTC
TTCTTTTTTTATTGTTCCAAAAGTGCTCTGATGTGGTGCCTTGATGTCTAATGAAAAGAA
ATTGGTCTTAAAAAGCTACTCATTGTTTATCCCTACTCTTAGATAACACATTTTTCTTCT
GATAAAATATTTTTCTTATTTATTGTTGAAAACACACACTAAAGACAATAATTCTAATTC
TGGTGCTGTTTTATTTAGTAGTGTTTTATTCCTGGTGCCTGGCTGTCTACCACCATACCT
CAGCACATAACTTTACTCTGAGATAAGCCTCCTCTCCGTTGCTCTCTCTCCCTTGCTTTC
TGTAGTTTGTCTGCAGGAATGCAGGTTTCCACTGAAGAGCGCAGTGGAGTTCTTACTGTG
CCTTTCCGGTTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               250-369, - strand, RNAz p=0.547578
               

               
               689-852, - strand, RNAz p=0.818357

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               250-369, - strand, RNAz p=0.547578
               

               
               689-852, - strand, RNAz p=0.818357

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-852, gnl|bosTau2|chr2 (35541853-35541010)
               

               
               8-852, gnl|Hg17|chr2 (145019462-145018621)
               

               
               8-852, gnl|Mm7|chr2 (45028324-45027350)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-852, gnl|bosTau2|chr2 (35541853-35541010)
               

               
               8-852, gnl|Hg17|chr2 (145019462-145018621)
               

               
               8-852, gnl|Mm7|chr2 (45028324-45027350)

	250-369, - strand, RNAz p=0.547578
	689-852, - strand, RNAz p=0.818357

	8-852, gnl\|bosTau2\|chr2 (35541853-35541010)
	8-852, gnl\|Hg17\|chr2 (145019462-145018621)
	8-852, gnl\|Mm7\|chr2 (45028324-45027350)