Ss1.1-Blo2-AR040E11PBC30GE11S.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGATAGCTGGAAGACTTCCGGCCCCCATTGTGCTATATAAGAAATTCCAACAAGAAAT TAATGAGGAGATACCACAAGAAGTCTGNTATTGTGGCCGGCTTATGCAGTACCATCGTCT GAGGTCTAATACTTTCCGCTGCTTAATATCTTCCAGGGGAGAATACTGAGGCCACTCCCT TTGATGTCTTCCTTTCTTATCTGAAGTTTTTTTCTTGGAAATTTGTTTCTTTACATTGCC TGATTTGTGTTTCAAATTCGTGGTCACTCCATCAAATTCAGATTTATCAATTTCCCATGC GAGAGGTAGCTTGCCCAGGCTGTTGGATAAGTTTTCCAAGCTGTTTTCTTCCTTGTAGAT GATTTCCGATGTACCGGTCGGAGAGCCAATGAATCTTGAGGAATGATTTCCAGCAGATAA AGAGGTATTATCAGGCAGGCAGGAAGGGCGGGTTGAATGTGGAGTTTTATAGATTGAGGT CGCCTGGTTGAGAAAGGCATAGTCCGAACAGATGGCGTAAATTTTCTCCCGCGTGTGGGT CACGGGACAGCTCCACGGGTAATGACCATCTCCTTTGGGACCCAAGGGTTCTCCTGGGGT CCGAGTGCAGAAGGACGACGTGCGAGCTTGCAGATTCTCGTCCGGAGACCTTCGCTCCGA CCTGCACTCACCATTTCCGGAAGCATCTGCCCTTTCTGCTTCTGCCACGTTCGGCATTGA ATGCAACGAGGAGAGTGCTGTCACCAGGAAGACGCTGCCGCGCTGTCTCAGTCTCGCAAA ACAGCCCTGCCGAGTGTTTACAGCATTTTCCAAACACGTGAGAGCTGCAAAACGGTCCCC TCTGGCCTGTCCGGTGGGGTCGGGTCGCTGCAGCCCGCGGCGAAGCCCGGCAGTGGTCCT GGATCACAGCTCCCAGCGCGCGGCCCGCGACGCGCCTCTGGTTACCCTGGAGCGGGCGTC TCTCGTCCCATCGGAGCGCGCGGGGACAGCGCCCTGACTGCTGTGCCGGGCGACCGATGG TCAGATATCATTGACAACACCTTCCTTTCACCGTGTTTTACACCTGCCCTCTGCACGTGC GGAGATATGACGACAATTTAAAACAAAACAAAACAAAACCTTAGCTGCGCCTCCAGACCC ACGCGCCCTCTATTAAGCGCCTACTGCTGATCTCTCCGCTGAAAGCGGGGACCGCAAAGT AAATAAATGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGATAGCTGGAAGACTTCCGGCCCCCATTGTGCTATATAAGAAATTCCAACAAGAAAT TAATGAGGAGATACCACAAGAAGTCTGNTATTGTGGCCGGCTTATGCAGTACCATCGTCT GAGGTCTAATACTTTCCGCTGCTTAATATCTTCCAGGGGAGAATACTGAGGCCACTCCCT TTGATGTCTTCCTTTCTTATCTGAAGTTTTTTTCTTGGAAATTTGTTTCTTTACATTGCC TGATTTGTGTTTCAAATTCGTGGTCACTCCATCAAATTCAGATTTATCAATTTCCCATGC GAGAGGTAGCTTGCCCAGGCTGTTGGATAAGTTTTCCAAGCTGTTTTCTTCCTTGTAGAT GATTTCCGATGTACCGGTCGGAGAGCCAATGAATCTTGAGGAATGATTTCCAGCAGATAA AGAGGTATTATCAGGCAGGCAGGAAGGGCGGGTTGAATGTGGAGTTTTATAGATTGAGGT CGCCTGGTTGAGAAAGGCATAGTCCGAACAGATGGCGTAAATTTTCTCCCGCGTGTGGGT CACGGGACAGCTCCACGGGTAATGACCATCTCCTTTGGGACCCAAGGGTTCTCCTGGGGT CCGAGTGCAGAAGGACGACGTGCGAGCTTGCAGATTCTCGTCCGGAGACCTTCGCTCCGA CCTGCACTCACCATTTCCGGAAGCATCTGCCCTTTCTGCTTCTGCCACGTTCGGCATTGA ATGCAACGAGGAGAGTGCTGTCACCAGGAAGACGCTGCCGCGCTGTCTCAGTCTCGCAAA ACAGCCCTGCCGAGTGTTTACAGCATTTTCCAAACACGTGAGAGCTGCAAAACGGTCCCC TCTGGCCTGTCCGGTGGGGTCGGGTCGCTGCAGCCCGCGGCGAAGCCCGGCAGTGGTCCT GGATCACAGCTCCCAGCGCGCGGCCCGCGACGCGCCTCTGGTTACCCTGGAGCGGGCGTC TCTCGTCCCATCGGAGCGCGCGGGGACAGCGCCCTGACTGCTGTGCCGGGCGACCGATGG TCAGATATCATTGACAACACCTTCCTTTCACCGTGTTTTACACCTGCCCTCTGCACGTGC GGAGATATGACGACAATTTAAAACAAAACAAAACAAAACCTTAGCTGCGCCTCCAGACCC ACGCGCCCTCTATTAAGCGCCTACTGCTGATCTCTCCGCTGAAAGCGGGGACCGCAAAGT AAATAAATGAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 911-1030, - strand, RNAz p=0.945548 | |
| 987-1099, - strand, RNAz p=0.990342 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 911-1030, - strand, RNAz p=0.945548 | |
| 987-1099, - strand, RNAz p=0.990342 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_017693, - |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 106-242, gnl|bosTau2|chr12 (42560583-42560720) | |
| 106-242, gnl|canFam2|chr22 (55255392-55255569) | |
| 106-242, gnl|dasNov1|scaffold_1117 (30365-30547) | |
| 106-242, gnl|echTel1|scaffold_321288 (7846-8019) | |
| 106-242, gnl|fr1|chrUn (238526006-238525843) | |
| 106-242, gnl|galGal2|chr1 (135473478-135473300) | |
| 106-242, gnl|hg17|chr13 (102266753-102266931) | |
| 106-242, gnl|Hg17|chr13 (102266912-102266776) | |
| 106-242, gnl|loxAfr1|scaffold_84 (59170-58995) | |
| 106-242, gnl|mm7|chr1 (44368000-44368181) | |
| 106-242, gnl|Mm7|chr1 (44368154-44368020) | |
| 106-242, gnl|monDom2|scaffold_11 (48245210-48245034) | |
| 106-242, gnl|panTro1|chr14 (85658606-85658784) | |
| 106-242, gnl|rheMac2|chr17 (83116198-83116376) | |
| 106-242, gnl|rn3|chr9 (43222461-43222642) | |
| 106-242, gnl|tetNig1|chr1_random (1007461-1007314) | |
| 106-242, gnl|xenTro1|scaffold_77 (2380783-2380957) | |
| 365-832, gnl|bosTau2|chr12 (42564198-42564662) | |
| 365-832, gnl|Hg17|chr13 (102257971-102257505) | |
| 365-832, gnl|Mm7|chr1 (44367128-44366661) | |
| 839-1099, gnl|bosTau2|chr12 (42574010-42574270) | |
| 839-1099, gnl|canFam2|chr22 (55242890-55243187) | |
| 839-1099, gnl|dasNov1|scaffold_72682 (3647-3299) | |
| 839-1099, gnl|echTel1|scaffold_293928 (938-647) | |
| 839-1099, gnl|hg17|chr13 (102249566-102249867) | |
| 839-1099, gnl|Hg17|chr13 (102249873-102249618) | |
| 839-1099, gnl|mm7|chr1 (44359496-44359752) | |
| 839-1099, gnl|oryCun1|scaffold_205467 (43439-43176) | |
| 839-1099, gnl|panTro1|chr14 (85641083-85641384) | |
| 839-1099, gnl|rheMac2|chr17 (83099839-83100150) | |
| 839-1099, gnl|rn3|chr9 (43208965-43209236) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 106-242, gnl|bosTau2|chr12 (42560583-42560720) | |
| 106-242, gnl|canFam2|chr22 (55255392-55255569) | |
| 106-242, gnl|dasNov1|scaffold_1117 (30365-30547) | |
| 106-242, gnl|echTel1|scaffold_321288 (7846-8019) | |
| 106-242, gnl|fr1|chrUn (238526006-238525843) | |
| 106-242, gnl|galGal2|chr1 (135473478-135473300) | |
| 106-242, gnl|hg17|chr13 (102266753-102266931) | |
| 106-242, gnl|Hg17|chr13 (102266912-102266776) | |
| 106-242, gnl|loxAfr1|scaffold_84 (59170-58995) | |
| 106-242, gnl|mm7|chr1 (44368000-44368181) | |
| 106-242, gnl|Mm7|chr1 (44368154-44368020) | |
| 106-242, gnl|monDom2|scaffold_11 (48245210-48245034) | |
| 106-242, gnl|panTro1|chr14 (85658606-85658784) | |
| 106-242, gnl|rheMac2|chr17 (83116198-83116376) | |
| 106-242, gnl|rn3|chr9 (43222461-43222642) | |
| 106-242, gnl|tetNig1|chr1_random (1007461-1007314) | |
| 106-242, gnl|xenTro1|scaffold_77 (2380783-2380957) | |
| 365-832, gnl|bosTau2|chr12 (42564198-42564662) | |
| 365-832, gnl|Hg17|chr13 (102257971-102257505) | |
| 365-832, gnl|Mm7|chr1 (44367128-44366661) | |
| 839-1099, gnl|bosTau2|chr12 (42574010-42574270) | |
| 839-1099, gnl|canFam2|chr22 (55242890-55243187) | |
| 839-1099, gnl|dasNov1|scaffold_72682 (3647-3299) | |
| 839-1099, gnl|echTel1|scaffold_293928 (938-647) | |
| 839-1099, gnl|hg17|chr13 (102249566-102249867) | |
| 839-1099, gnl|Hg17|chr13 (102249873-102249618) | |
| 839-1099, gnl|mm7|chr1 (44359496-44359752) | |
| 839-1099, gnl|oryCun1|scaffold_205467 (43439-43176) | |
| 839-1099, gnl|panTro1|chr14 (85641083-85641384) | |
| 839-1099, gnl|rheMac2|chr17 (83099839-83100150) | |
| 839-1099, gnl|rn3|chr9 (43208965-43209236) |