Ss1.1-Bra1-olf_061_B06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGAATTCAATGTGTCCTGCTTGACAGACAGCAATGCGGACACCTACTGGGAGAGCGA CGGGTCCCAGTGCCAGCACTGGGTACGGCTTACCATGAAAAAAGGCACCATTGTCAAGAA GCTGCTGCTCACAGTGGACACCACGGATGACAACTTCATGCCCAAGCGGGTGGTGGTCTA TGGGGGCGAAGGGGACAACCTGAAGAAGCTGAGTGACGTGAGCATTGACGAGACCCTGAT CGGCGATGTCTGTGTCCTGGAGGACATGACCGTCCACCTCCCGGTCATCGAGATCCGCAT TGTCGAGTGCCGAGATGACNGGGATCGATGTGCGCCTTCGAGGGGTCAAGATCAAGTCCT CCAGACAGCGGGAACTAGGGTTGAATGCAGACCTGTTCCAGCCGACCAGTCTGGTGCGAT ATCCACGCCTTGAAGGGACGGACCCAGAAGTGCTGTACCGCAGAGCTGTTCTCCTGCAGA GGTTCATAAAGATCCTAGACAGCGTCCTGCACCACCTGGTACCTGCCTGGGACCACACGC TGGGCACCTTCAGTGAGATTAAGCAAGTGAAGCAGTTCCTGCTGCTGTCTCGCCAGCGGC CGGGCCTGGTGACCCAGTGCCTGCATGACTTAGAGAGCAGCAAGCCCAGCTTCATGCCTC GCCTGTACATCAACCGGCGCCTCGCCATGGAGCACCGAGCCTGCCCCTCGAGGGACCCGG CCTGCAAGAACGCGGTCTTCACCCAGGTTTATGAAGGCCTCAAGCCCTCTGACAAGTACG AAAAGCCCCTGGACTACAGGTGGCCCATGCGCTACGACCAATGGTGGGAGTGTAAATTCA TTGCAGAAGGCATCATTGACCAAGGGGGCGGCTTCCGGGACAGCCTGGCAGACATGTCAG AGGAACTGTGCCCTAGTTCGGCAGACACCCCAGTGCCTCTGCCCTTCTTTGTACGCACGG CCAACCAGGGCAATGGGCACGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGAATTCAATGTGTCCTGCTTGACAGACAGCAATGCGGACACCTACTGGGAGAGCGA CGGGTCCCAGTGCCAGCACTGGGTACGGCTTACCATGAAAAAAGGCACCATTGTCAAGAA GCTGCTGCTCACAGTGGACACCACGGATGACAACTTCATGCCCAAGCGGGTGGTGGTCTA TGGGGGCGAAGGGGACAACCTGAAGAAGCTGAGTGACGTGAGCATTGACGAGACCCTGAT CGGCGATGTCTGTGTCCTGGAGGACATGACCGTCCACCTCCCGGTCATCGAGATCCGCAT TGTCGAGTGCCGAGATGACNGGGATCGATGTGCGCCTTCGAGGGGTCAAGATCAAGTCCT CCAGACAGCGGGAACTAGGGTTGAATGCAGACCTGTTCCAGCCGACCAGTCTGGTGCGAT ATCCACGCCTTGAAGGGACGGACCCAGAAGTGCTGTACCGCAGAGCTGTTCTCCTGCAGA GGTTCATAAAGATCCTAGACAGCGTCCTGCACCACCTGGTACCTGCCTGGGACCACACGC TGGGCACCTTCAGTGAGATTAAGCAAGTGAAGCAGTTCCTGCTGCTGTCTCGCCAGCGGC CGGGCCTGGTGACCCAGTGCCTGCATGACTTAGAGAGCAGCAAGCCCAGCTTCATGCCTC GCCTGTACATCAACCGGCGCCTCGCCATGGAGCACCGAGCCTGCCCCTCGAGGGACCCGG CCTGCAAGAACGCGGTCTTCACCCAGGTTTATGAAGGCCTCAAGCCCTCTGACAAGTACG AAAAGCCCCTGGACTACAGGTGGCCCATGCGCTACGACCAATGGTGGGAGTGTAAATTCA TTGCAGAAGGCATCATTGACCAAGGGGGCGGCTTCCGGGACAGCCTGGCAGACATGTCAG AGGAACTGTGCCCTAGTTCGGCAGACACCCCAGTGCCTCTGCCCTTCTTTGTACGCACGG CCAACCAGGGCAATGGGCACGGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 562-680, - strand, RNAz p=0.986688 | |
| 633-748, + strand, RNAz p=0.940116 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 562-680, - strand, RNAz p=0.986688 | |
| 633-748, + strand, RNAz p=0.940116 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-118, gnl|bosTau2|chr3 (68327828-68327711) | |
| 1-118, gnl|canFam2|chr15 (18326377-18326236) | |
| 1-118, gnl|danRer3|chr2 (17790622-17790517) | |
| 1-118, gnl|echTel1|scaffold_299536 (4484-4345) | |
| 1-118, gnl|fr1|chrUn (246645477-246645596) | |
| 1-118, gnl|galGal2|chr8 (21188224-21188356) | |
| 1-118, gnl|hg17|chr1 (45144313-45144453) | |
| 1-118, gnl|Hg17|chr1 (45144449-45144332) | |
| 1-118, gnl|mm7|chr4 (116373490-116373350) | |
| 1-118, gnl|Mm7|chr4 (116373352-116373469) | |
| 1-118, gnl|panTro1|chr1_random (65528176-65528036) | |
| 1-118, gnl|rheMac2|chr1 (47938486-47938626) | |
| 1-118, gnl|tetNig1|chrUn_random (17134996-17134871) | |
| 562-748, gnl|bosTau2|chr3 (68325524-68325338) | |
| 562-748, gnl|canFam2|chr15 (18328531-18328345) | |
| 562-748, gnl|danRer3|chr2 (17795637-17795451) | |
| 562-748, gnl|dasNov1|scaffold_72027 (1253-1068) | |
| 562-748, gnl|echTel1|scaffold_299536 (6697-6511) | |
| 562-748, gnl|fr1|chrUn (246642810-246642996) | |
| 562-748, gnl|galGal2|chr8 (21185082-21185268) | |
| 562-748, gnl|hg17|chr1 (45142177-45142363) | |
| 562-748, gnl|Hg17|chr1 (45142362-45142176) | |
| 562-748, gnl|loxAfr1|scaffold_22711 (48670-48484) | |
| 562-748, gnl|mm7|chr4 (116376202-116376016) | |
| 562-748, gnl|Mm7|chr4 (116376015-116376201) | |
| 562-748, gnl|rheMac2|chr1 (47936355-47936541) | |
| 562-748, gnl|rn3|chr5 (137310974-137310788) | |
| 562-748, gnl|tetNig1|chrUn_random (17137075-17136889) | |
| 562-748, gnl|xenTro1|scaffold_1 (7449595-7449781) | |
| 863-969, gnl|bosTau2|chr3 (68324732-68324626) | |
| 863-969, gnl|canFam2|chr15 (18329269-18329128) | |
| 863-969, gnl|danRer3|chr2 (17797094-17796975) | |
| 863-969, gnl|dasNov1|scaffold_72027 (1881-1739) | |
| 863-969, gnl|echTel1|scaffold_299536 (7422-7299) | |
| 863-969, gnl|fr1|chrUn (246642277-246642394) | |
| 863-969, gnl|galGal2|chr8 (21183425-21183541) | |
| 863-969, gnl|hg17|chr1 (45141444-45141561) | |
| 863-969, gnl|Hg17|chr1 (45141562-45141456) | |
| 863-969, gnl|loxAfr1|scaffold_22711 (49393-49263) | |
| 863-969, gnl|mm7|chr4 (116376825-116376687) | |
| 863-969, gnl|Mm7|chr4 (116376684-116376790) | |
| 863-969, gnl|monDom2|scaffold_70 (7811519-7811409) | |
| 863-969, gnl|oryCun1|scaffold_164836 (3842-3737) | |
| 863-969, gnl|panTro1|chr1_random (65531032-65530915) | |
| 863-969, gnl|rheMac2|chr1 (47935664-47935781) | |
| 863-969, gnl|rn3|chr5 (137311600-137311463) | |
| 863-969, gnl|tetNig1|chrUn_random (17137562-17137462) | |
| 863-969, gnl|xenTro1|scaffold_1 (7438897-7439019) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-118, gnl|bosTau2|chr3 (68327828-68327711) | |
| 1-118, gnl|canFam2|chr15 (18326377-18326236) | |
| 1-118, gnl|danRer3|chr2 (17790622-17790517) | |
| 1-118, gnl|echTel1|scaffold_299536 (4484-4345) | |
| 1-118, gnl|fr1|chrUn (246645477-246645596) | |
| 1-118, gnl|galGal2|chr8 (21188224-21188356) | |
| 1-118, gnl|hg17|chr1 (45144313-45144453) | |
| 1-118, gnl|Hg17|chr1 (45144449-45144332) | |
| 1-118, gnl|mm7|chr4 (116373490-116373350) | |
| 1-118, gnl|Mm7|chr4 (116373352-116373469) | |
| 1-118, gnl|panTro1|chr1_random (65528176-65528036) | |
| 1-118, gnl|rheMac2|chr1 (47938486-47938626) | |
| 1-118, gnl|tetNig1|chrUn_random (17134996-17134871) | |
| 562-748, gnl|bosTau2|chr3 (68325524-68325338) | |
| 562-748, gnl|canFam2|chr15 (18328531-18328345) | |
| 562-748, gnl|danRer3|chr2 (17795637-17795451) | |
| 562-748, gnl|dasNov1|scaffold_72027 (1253-1068) | |
| 562-748, gnl|echTel1|scaffold_299536 (6697-6511) | |
| 562-748, gnl|fr1|chrUn (246642810-246642996) | |
| 562-748, gnl|galGal2|chr8 (21185082-21185268) | |
| 562-748, gnl|hg17|chr1 (45142177-45142363) | |
| 562-748, gnl|Hg17|chr1 (45142362-45142176) | |
| 562-748, gnl|loxAfr1|scaffold_22711 (48670-48484) | |
| 562-748, gnl|mm7|chr4 (116376202-116376016) | |
| 562-748, gnl|Mm7|chr4 (116376015-116376201) | |
| 562-748, gnl|rheMac2|chr1 (47936355-47936541) | |
| 562-748, gnl|rn3|chr5 (137310974-137310788) | |
| 562-748, gnl|tetNig1|chrUn_random (17137075-17136889) | |
| 562-748, gnl|xenTro1|scaffold_1 (7449595-7449781) | |
| 863-969, gnl|bosTau2|chr3 (68324732-68324626) | |
| 863-969, gnl|canFam2|chr15 (18329269-18329128) | |
| 863-969, gnl|danRer3|chr2 (17797094-17796975) | |
| 863-969, gnl|dasNov1|scaffold_72027 (1881-1739) | |
| 863-969, gnl|echTel1|scaffold_299536 (7422-7299) | |
| 863-969, gnl|fr1|chrUn (246642277-246642394) | |
| 863-969, gnl|galGal2|chr8 (21183425-21183541) | |
| 863-969, gnl|hg17|chr1 (45141444-45141561) | |
| 863-969, gnl|Hg17|chr1 (45141562-45141456) | |
| 863-969, gnl|loxAfr1|scaffold_22711 (49393-49263) | |
| 863-969, gnl|mm7|chr4 (116376825-116376687) | |
| 863-969, gnl|Mm7|chr4 (116376684-116376790) | |
| 863-969, gnl|monDom2|scaffold_70 (7811519-7811409) | |
| 863-969, gnl|oryCun1|scaffold_164836 (3842-3737) | |
| 863-969, gnl|panTro1|chr1_random (65531032-65530915) | |
| 863-969, gnl|rheMac2|chr1 (47935664-47935781) | |
| 863-969, gnl|rn3|chr5 (137311600-137311463) | |
| 863-969, gnl|tetNig1|chrUn_random (17137562-17137462) | |
| 863-969, gnl|xenTro1|scaffold_1 (7438897-7439019) |