Non-Coding RNA Search

Ss1.1-Bra1-olf_071_E07.5

Sequence:


               
               AGCGGCGGGAGCCGGGGCGCGCTGTCTTGGGAGCGTGCCGTCCGGGCCAAGCACCGCGGC
CTCCAGCCGCTCTTTGCCTTCAGTGAACAGCGGGGAGAAGGGCTGGTGCTGAGGGGGGCG
AAGGTACCGAGCCCCAATACCTAAACTAGAGTTGTCGGGCTGCCTGCAGCCCCCGCAGCC
CCCTGGGGTGCTCGGCCTGACCCACCACCCGCGTCTGGGTTACGCCATGGATCCTTCGGA
AAAGAAGATATCGGTGTGGATTTGCCAGGAGGAAAAACTAGTCTCCGGTCTCTCCCGCCG
CACCACTTGCTCGGACGTAGTGCGGAGTACTCTTGGAGGACGGCTGCCGGCGGCGACGGC
GGCAGCGGCGGGGCAGGCGGCGAGGGGCAGCCGGCGACCCGCCAGACCCAGCGGAGCTGA
CGGAAGCCCTGGACGAGGACGACGAGGATGATGACGAGGGGCTGCCTGAGAGCATGCTGT
GCGGGCCCCCGCAGTGCTACTGCATCGTGGAGAAGTGGCGTGGCTTTGAACGCATCCTGC
CCAACAAGACGCGCATCTTGCGCCTCTGGGCAGCCTGGGGTGAAGAGCAAGAGAACGTAC
GCTTTGTGCTAGTGCGCAGCGAAGCGTCTTTGCCCAATGCGGGCCCCCGCAGTGCAGAGG
CACGCGTTGTGCTCAGTCGTGAGCGCCCGTGCTTGGCCCGGGGGGTCCCGGCGCGGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGCGGGAGCCGGGGCGCGCTGTCTTGGGAGCGTGCCGTCCGGGCCAAGCACCGCGGC
CTCCAGCCGCTCTTTGCCTTCAGTGAACAGCGGGGAGAAGGGCTGGTGCTGAGGGGGGCG
AAGGTACCGAGCCCCAATACCTAAACTAGAGTTGTCGGGCTGCCTGCAGCCCCCGCAGCC
CCCTGGGGTGCTCGGCCTGACCCACCACCCGCGTCTGGGTTACGCCATGGATCCTTCGGA
AAAGAAGATATCGGTGTGGATTTGCCAGGAGGAAAAACTAGTCTCCGGTCTCTCCCGCCG
CACCACTTGCTCGGACGTAGTGCGGAGTACTCTTGGAGGACGGCTGCCGGCGGCGACGGC
GGCAGCGGCGGGGCAGGCGGCGAGGGGCAGCCGGCGACCCGCCAGACCCAGCGGAGCTGA
CGGAAGCCCTGGACGAGGACGACGAGGATGATGACGAGGGGCTGCCTGAGAGCATGCTGT
GCGGGCCCCCGCAGTGCTACTGCATCGTGGAGAAGTGGCGTGGCTTTGAACGCATCCTGC
CCAACAAGACGCGCATCTTGCGCCTCTGGGCAGCCTGGGGTGAAGAGCAAGAGAACGTAC
GCTTTGTGCTAGTGCGCAGCGAAGCGTCTTTGCCCAATGCGGGCCCCCGCAGTGCAGAGG
CACGCGTTGTGCTCAGTCGTGAGCGCCCGTGCTTGGCCCGGGGGGTCCCGGCGCGGCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               486-645, - strand, RNAz p=0.753338

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               486-645, - strand, RNAz p=0.753338

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               610-713, - strand, RNAmicro p=0.97181

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               610-713, - strand, RNAmicro p=0.97181

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-720, gnl|bosTau2|chr15 (24952030-24951312)
               

               
               9-720, gnl|Hg17|chr11 (12987460-12988192)
               

               
               9-720, gnl|Mm7|chr7 (108870005-108870707)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-720, gnl|bosTau2|chr15 (24952030-24951312)
               

               
               9-720, gnl|Hg17|chr11 (12987460-12988192)
               

               
               9-720, gnl|Mm7|chr7 (108870005-108870707)

	9-720, gnl\|bosTau2\|chr15 (24952030-24951312)
	9-720, gnl\|Hg17\|chr11 (12987460-12988192)
	9-720, gnl\|Mm7\|chr7 (108870005-108870707)