Non-Coding RNA Search

Ss1.1-Bra1-olf_131_E07.5

Sequence:


               
               GCCGCCCAGCACGGGGGCTATGAAATCCCGGCCCGGCTACGCACCCTGCACAACCTGGTG
ATCCAGTACGCCTCCCAGGGCCGCTATGAGGTAGCCGTGCCACTCTGCAAGCAGGCCCTC
GAGGACCTGGAGAAGACGTCAGGCCACGACCACCCTGACGTGGCCACCATGCTGAACATC
CTGGCGCTGGTCTATCGGGACCAGAACAAGTACAAGGAGGCTGCCCACCTGCTCAATGAT
GCCCTGGCCATCCGTGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGCCGCGACACTA
AACAACCTGGCGGTCCTGTACGGCAAGCGGGGCAAGTACAAGGAGGCCGAGCCGCTATGC
AAGCGAGCCCTGGAGATCCGGGAGAAGGTTCTGGGCAAGTTTCATCCAGACGTGGCCAAG
CAGCTGAGCAACCTGGCCCTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAGTAC
TACTACCGGCGGGCGCTGGAGATCTACGCCACGCGCCTTGGGCCTGACGACCCCAACGTG
GCCAAGACCAAGAACAACCTGGCCTCCTGCTACCTGAAGCAGGGCAAGTACCAGGACGCG
GAGACCCTGTACAAGGAGATCCTCACCCGTGCCCACGAGAAGGAGTTTGGCTCTGTCAAC
GGGGACAACAAGCCCATCTGGATGCACGCAGAGGAGCGGGAGGAGAGCAAGGATAAGCGC
CGGGACAGCACACCCTATGGGGAATATGGTAGCTGGTACAAGGCCTGCAAAGTAGACAGC
CCCACGGTCAACACCACCCTGCGCAGCTTGGGGGCGCTGTACCGGCGCCAGGGCAAGCTA
GAAGCCGCACACACACTGGAGGACTGTGCCAGCCGCAGCCGCAAGCAGGGCCTGGACCCC
GCAAGCCAGACTAAAGTGGTGGAACTGCTGAAAGACGGCGGTGGTGGGCGGGGAGACCGC
CGTGGCAGCCGAGACGTGGCCGGGGGAGCTGGGGCCCGGTCTGAGGCTGACCTTGAGGAG
TCCGGGCCGGCAGCCGAGTGGAGCGGGGTGAGTGTANGGGCCGGACTGGGCCGAGAGGCT
GCGTANCTGGCGTGGCGCANACGAACCCGTCCACCCCACAGGACGGCAGTGGCTCCTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCCAGCACGGGGGCTATGAAATCCCGGCCCGGCTACGCACCCTGCACAACCTGGTG
ATCCAGTACGCCTCCCAGGGCCGCTATGAGGTAGCCGTGCCACTCTGCAAGCAGGCCCTC
GAGGACCTGGAGAAGACGTCAGGCCACGACCACCCTGACGTGGCCACCATGCTGAACATC
CTGGCGCTGGTCTATCGGGACCAGAACAAGTACAAGGAGGCTGCCCACCTGCTCAATGAT
GCCCTGGCCATCCGTGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGCCGCGACACTA
AACAACCTGGCGGTCCTGTACGGCAAGCGGGGCAAGTACAAGGAGGCCGAGCCGCTATGC
AAGCGAGCCCTGGAGATCCGGGAGAAGGTTCTGGGCAAGTTTCATCCAGACGTGGCCAAG
CAGCTGAGCAACCTGGCCCTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAGTAC
TACTACCGGCGGGCGCTGGAGATCTACGCCACGCGCCTTGGGCCTGACGACCCCAACGTG
GCCAAGACCAAGAACAACCTGGCCTCCTGCTACCTGAAGCAGGGCAAGTACCAGGACGCG
GAGACCCTGTACAAGGAGATCCTCACCCGTGCCCACGAGAAGGAGTTTGGCTCTGTCAAC
GGGGACAACAAGCCCATCTGGATGCACGCAGAGGAGCGGGAGGAGAGCAAGGATAAGCGC
CGGGACAGCACACCCTATGGGGAATATGGTAGCTGGTACAAGGCCTGCAAAGTAGACAGC
CCCACGGTCAACACCACCCTGCGCAGCTTGGGGGCGCTGTACCGGCGCCAGGGCAAGCTA
GAAGCCGCACACACACTGGAGGACTGTGCCAGCCGCAGCCGCAAGCAGGGCCTGGACCCC
GCAAGCCAGACTAAAGTGGTGGAACTGCTGAAAGACGGCGGTGGTGGGCGGGGAGACCGC
CGTGGCAGCCGAGACGTGGCCGGGGGAGCTGGGGCCCGGTCTGAGGCTGACCTTGAGGAG
TCCGGGCCGGCAGCCGAGTGGAGCGGGGTGAGTGTANGGGCCGGACTGGGCCGAGAGGCT
GCGTANCTGGCGTGGCGCANACGAACCCGTCCACCCCACAGGACGGCAGTGGCTCCTTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839165|ref|XP_596320.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839165|ref|XP_596320.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               886-1004, + strand, RNAz p=0.51894

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               886-1004, + strand, RNAz p=0.51894

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-198, gnl|bosTau2|chr18 (38520021-38519824)
               

               
               1-198, gnl|Hg17|chr19 (50543062-50543259)
               

               
               1-198, gnl|Mm7|chr7 (17079442-17079245)
               


               
               386-562, gnl|bosTau2|chr18 (38518909-38518733)
               

               
               386-562, gnl|Hg17|chr19 (50544525-50544701)
               

               
               386-562, gnl|Mm7|chr7 (17078349-17078173)
               


               
               886-1140, gnl|bosTau2|chr29 (39869265-39869521)
               

               
               886-1140, gnl|Hg17|chr11 (65789898-65790158)
               

               
               886-1140, gnl|Mm7|chr19 (5004451-5004213)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-198, gnl|bosTau2|chr18 (38520021-38519824)
               

               
               1-198, gnl|Hg17|chr19 (50543062-50543259)
               

               
               1-198, gnl|Mm7|chr7 (17079442-17079245)
               


               
               386-562, gnl|bosTau2|chr18 (38518909-38518733)
               

               
               386-562, gnl|Hg17|chr19 (50544525-50544701)
               

               
               386-562, gnl|Mm7|chr7 (17078349-17078173)
               


               
               886-1140, gnl|bosTau2|chr29 (39869265-39869521)
               

               
               886-1140, gnl|Hg17|chr11 (65789898-65790158)
               

               
               886-1140, gnl|Mm7|chr19 (5004451-5004213)

	1-198, gnl\|bosTau2\|chr18 (38520021-38519824)
	1-198, gnl\|Hg17\|chr19 (50543062-50543259)
	1-198, gnl\|Mm7\|chr7 (17079442-17079245)

	386-562, gnl\|bosTau2\|chr18 (38518909-38518733)
	386-562, gnl\|Hg17\|chr19 (50544525-50544701)
	386-562, gnl\|Mm7\|chr7 (17078349-17078173)

	886-1140, gnl\|bosTau2\|chr29 (39869265-39869521)
	886-1140, gnl\|Hg17\|chr11 (65789898-65790158)
	886-1140, gnl\|Mm7\|chr19 (5004451-5004213)