Non-Coding RNA Search

Ss1.1-Emb1-C0005181_M09.5

Sequence:


               
               CGCGCTACCACTGTCAAAGAAAGCAAAGTTTGAGTCCTAATAATGGCAACGGCCTGTGAT
CAGTACCTGTTGAGAAAACTGGTTCTCCACCCCTCTCCCTACAAAATCAACAACAAAGCA
GTGGTCTCTTGTGAATGACTGACAAAGATCAGCCTCGCACACTTGACTTCTGCTCATCAA
GTGCCAATTCAATGGAGCAGGAGGAGGGGATATTATGTATTTAGGGGAAAGACTTAACTT
TGAGCTCTCCAGCTTGGACCACACATTGCCCTTTTCTCAGGGAAGGAAATGGAAACAAAA
AGCCAACAGGGCAGGGGGTTTTGTAAGTGGAACTCTGAATTGACTGGTCAGTTGCTACAA
TCAGAATATGCTTTCTCGGACCATGTTTGAGACTGAGAGGAATATAGGCTTTTTGGCCCT
AATTCTTCACTAGTTAAGAATGCCAGCAGTTTCTTTGTATAAAGAGACCTGCCTTTAAAA
TCATACATTCTGAACATTTTAGTCAAGCTACAACAGGTCTGGAAAACCTCTGTGGGGGAG
GGGTGAATATAAAGTTTCTTCTTTTTTTAATCTGTTCCCTTTGCCCTTCAAACTGCAGAT
TTTTTTTTTTTTTTTTTTTTTAAAGTGGGGATTTGTCCCTACTTGATTAAAGATTGAGTG
GAATTCTAGATGTGGTCATTTGTGTCATAATTTTTTTTTTGTTTCATTTTGTTTTTGATT
TTTTTTTCTCCCCTGAATGTATGCTTAATTGTTGAGTATATATATTTGGGACCATTAAAA
ATCAAAAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCTACCACTGTCAAAGAAAGCAAAGTTTGAGTCCTAATAATGGCAACGGCCTGTGAT
CAGTACCTGTTGAGAAAACTGGTTCTCCACCCCTCTCCCTACAAAATCAACAACAAAGCA
GTGGTCTCTTGTGAATGACTGACAAAGATCAGCCTCGCACACTTGACTTCTGCTCATCAA
GTGCCAATTCAATGGAGCAGGAGGAGGGGATATTATGTATTTAGGGGAAAGACTTAACTT
TGAGCTCTCCAGCTTGGACCACACATTGCCCTTTTCTCAGGGAAGGAAATGGAAACAAAA
AGCCAACAGGGCAGGGGGTTTTGTAAGTGGAACTCTGAATTGACTGGTCAGTTGCTACAA
TCAGAATATGCTTTCTCGGACCATGTTTGAGACTGAGAGGAATATAGGCTTTTTGGCCCT
AATTCTTCACTAGTTAAGAATGCCAGCAGTTTCTTTGTATAAAGAGACCTGCCTTTAAAA
TCATACATTCTGAACATTTTAGTCAAGCTACAACAGGTCTGGAAAACCTCTGTGGGGGAG
GGGTGAATATAAAGTTTCTTCTTTTTTTAATCTGTTCCCTTTGCCCTTCAAACTGCAGAT
TTTTTTTTTTTTTTTTTTTTTAAAGTGGGGATTTGTCCCTACTTGATTAAAGATTGAGTG
GAATTCTAGATGTGGTCATTTGTGTCATAATTTTTTTTTTGTTTCATTTTGTTTTTGATT
TTTTTTTCTCCCCTGAATGTATGCTTAATTGTTGAGTATATATATTTGGGACCATTAAAA
ATCAAAAACAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20380232|gb|AAH28088.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20380232|gb|AAH28088.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               354-741, + strand, RNAz p=0.999358

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               354-741, + strand, RNAz p=0.999358

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC038932, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC038932, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-780, gnl|bosTau2|chr21 (35413204-35412448)
               

               
               5-780, gnl|Hg17|chr14 (90994891-90994125)
               

               
               5-780, gnl|Mm7|chr12 (98536056-98535279)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-780, gnl|bosTau2|chr21 (35413204-35412448)
               

               
               5-780, gnl|Hg17|chr14 (90994891-90994125)
               

               
               5-780, gnl|Mm7|chr12 (98536056-98535279)

	5-780, gnl\|bosTau2\|chr21 (35413204-35412448)
	5-780, gnl\|Hg17\|chr14 (90994891-90994125)
	5-780, gnl\|Mm7\|chr12 (98536056-98535279)