Non-Coding RNA Search

Ss1.1-Emb1-C0005182_M09.5

Sequence:


               
               GTAGGGATCTTCGAGAGATGGAGTTGCACTAAAGCACATGGCCAAGGCTTATTTTTTCTT
TCCCTTGCACTGGCTTCCTGACACTTCTTTTTTGTGCAAGAGAAAGGGGTACCTGGAGAA
AACTTTTTTTTCCTACCTGGCTAAGGGTAGATGGGACAGAGATGAAACCACTATCTCTTC
CCTGGGTCAGTCTGAGCTAACTGCCTGGGACCCCAAAAGAAACTCTTAGGCTGCAACATT
CTTCCCATATTAAGAGCCTGGGATTGCTAGGTAAGAGTTAGCGATAGTGGACAAGGTTCC
AGTCACATGCTCATTCATATGTTTATAAACTGCTGTGTTTTGTAGGAGAAAAAAATTATA
TAACTATACAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGGGGGCCAAAATAAAAAATTATTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGGATCTTCGAGAGATGGAGTTGCACTAAAGCACATGGCCAAGGCTTATTTTTTCTT
TCCCTTGCACTGGCTTCCTGACACTTCTTTTTTGTGCAAGAGAAAGGGGTACCTGGAGAA
AACTTTTTTTTCCTACCTGGCTAAGGGTAGATGGGACAGAGATGAAACCACTATCTCTTC
CCTGGGTCAGTCTGAGCTAACTGCCTGGGACCCCAAAAGAAACTCTTAGGCTGCAACATT
CTTCCCATATTAAGAGCCTGGGATTGCTAGGTAAGAGTTAGCGATAGTGGACAAGGTTCC
AGTCACATGCTCATTCATATGTTTATAAACTGCTGTGTTTTGTAGGAGAAAAAAATTATA
TAACTATACAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGGGGGCCAAAATAAAAAATTATTTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-228, - strand, RNAz p=0.982255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-228, - strand, RNAz p=0.982255

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-376, gnl|bosTau2|chr3 (27607836-27607469)
               

               
               1-376, gnl|Hg17|chr1 (112775428-112775786)
               

               
               1-376, gnl|Mm7|chr3 (104740011-104739674)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-376, gnl|bosTau2|chr3 (27607836-27607469)
               

               
               1-376, gnl|Hg17|chr1 (112775428-112775786)
               

               
               1-376, gnl|Mm7|chr3 (104740011-104739674)

	1-376, gnl\|bosTau2\|chr3 (27607836-27607469)
	1-376, gnl\|Hg17\|chr1 (112775428-112775786)
	1-376, gnl\|Mm7\|chr3 (104740011-104739674)