Ss1.1-Emb1-C0005184_L23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGAGAAAAGAGAGAAGAGGAGAAAGAGGGAGAAGATAAATCACAACCTAAATCTATC AGAGAGCGACGGCGACCACGAGAAAAGAGAAGATCTACAGGCGTTTCATTTTGGACACAA GATAGCGATGAAAATGAACAAGAACAACAATCAGATACGGAGGAGGGGTCCAGTAAGAAG GAAACGCAGACAGATTCCATTTCCAGATACGAGACCAGTTCTACGTCAGCTAGTGATCGG TATGATTCCTTGCTGGGTCGCTCTGGATCATACAGTTACTTAGAAGAAAGAAAACCTTAC AGTAGCAGGCTAGAAAAGGATGATTCAACCGACTTTAAAAAGCTTTATGAACAAATTCTA GCCGAAAATGAAAAGCTGAAAGCCCAGCTCCATGATACGAATATGGAACTGACAGATCTT AAACTACAGTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGAGAAAAGAGAGAAGAGGAGAAAGAGGGAGAAGATAAATCACAACCTAAATCTATC AGAGAGCGACGGCGACCACGAGAAAAGAGAAGATCTACAGGCGTTTCATTTTGGACACAA GATAGCGATGAAAATGAACAAGAACAACAATCAGATACGGAGGAGGGGTCCAGTAAGAAG GAAACGCAGACAGATTCCATTTCCAGATACGAGACCAGTTCTACGTCAGCTAGTGATCGG TATGATTCCTTGCTGGGTCGCTCTGGATCATACAGTTACTTAGAAGAAAGAAAACCTTAC AGTAGCAGGCTAGAAAAGGATGATTCAACCGACTTTAAAAAGCTTTATGAACAAATTCTA GCCGAAAATGAAAAGCTGAAAGCCCAGCTCCATGATACGAATATGGAACTGACAGATCTT AAACTACAGTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 250-342, - strand, RNAz p=0.538931 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 250-342, - strand, RNAz p=0.538931 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-123, gnl|bosTau2|chr5 (5492434-5492312) | |
| 1-123, gnl|canFam2|chr15 (25305812-25305929) | |
| 1-123, gnl|danRer3|chr4 (29441807-29441685) | |
| 1-123, gnl|echTel1|scaffold_295818 (1667-1773) | |
| 1-123, gnl|galGal2|chr1 (36426572-36426713) | |
| 1-123, gnl|hg17|chr12 (78691844-78691972) | |
| 1-123, gnl|Hg17|chr12 (78692008-78691886) | |
| 1-123, gnl|loxAfr1|scaffold_119183 (8403-8286) | |
| 1-123, gnl|mm7|chr10 (107724941-107724830) | |
| 1-123, gnl|Mm7|chr10 (107724792-107724914) | |
| 1-123, gnl|monDom2|scaffold_36 (13199766-13199886) | |
| 1-123, gnl|panTro1|chr10_random (29216846-29216718) | |
| 1-123, gnl|rheMac2|chr11 (76774489-76774668) | |
| 1-123, gnl|xenTro1|scaffold_724 (13291-13416) | |
| 200-342, gnl|bosTau2|chr5 (5481853-5481711) | |
| 200-342, gnl|canFam2|chr15 (25294335-25294518) | |
| 200-342, gnl|dasNov1|scaffold_12255 (11612-11790) | |
| 200-342, gnl|echTel1|scaffold_319041 (39653-39829) | |
| 200-342, gnl|galGal2|chr1 (36418478-36418675) | |
| 200-342, gnl|hg17|chr12 (78684871-78685053) | |
| 200-342, gnl|Hg17|chr12 (78685038-78684896) | |
| 200-342, gnl|loxAfr1|scaffold_57648 (18633-18813) | |
| 200-342, gnl|mm7|chr10 (107731218-107731035) | |
| 200-342, gnl|Mm7|chr10 (107731048-107731190) | |
| 200-342, gnl|monDom2|scaffold_36 (13169861-13170044) | |
| 200-342, gnl|oryCun1|scaffold_205184 (56780-56966) | |
| 200-342, gnl|panTro1|chr10 (80259748-80259930) | |
| 200-342, gnl|rheMac2|chr11 (76766431-76766609) | |
| 200-342, gnl|rn3|chr7 (46996536-46996354) | |
| 200-342, gnl|xenTro1|scaffold_724 (10635-10830) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-123, gnl|bosTau2|chr5 (5492434-5492312) | |
| 1-123, gnl|canFam2|chr15 (25305812-25305929) | |
| 1-123, gnl|danRer3|chr4 (29441807-29441685) | |
| 1-123, gnl|echTel1|scaffold_295818 (1667-1773) | |
| 1-123, gnl|galGal2|chr1 (36426572-36426713) | |
| 1-123, gnl|hg17|chr12 (78691844-78691972) | |
| 1-123, gnl|Hg17|chr12 (78692008-78691886) | |
| 1-123, gnl|loxAfr1|scaffold_119183 (8403-8286) | |
| 1-123, gnl|mm7|chr10 (107724941-107724830) | |
| 1-123, gnl|Mm7|chr10 (107724792-107724914) | |
| 1-123, gnl|monDom2|scaffold_36 (13199766-13199886) | |
| 1-123, gnl|panTro1|chr10_random (29216846-29216718) | |
| 1-123, gnl|rheMac2|chr11 (76774489-76774668) | |
| 1-123, gnl|xenTro1|scaffold_724 (13291-13416) | |
| 200-342, gnl|bosTau2|chr5 (5481853-5481711) | |
| 200-342, gnl|canFam2|chr15 (25294335-25294518) | |
| 200-342, gnl|dasNov1|scaffold_12255 (11612-11790) | |
| 200-342, gnl|echTel1|scaffold_319041 (39653-39829) | |
| 200-342, gnl|galGal2|chr1 (36418478-36418675) | |
| 200-342, gnl|hg17|chr12 (78684871-78685053) | |
| 200-342, gnl|Hg17|chr12 (78685038-78684896) | |
| 200-342, gnl|loxAfr1|scaffold_57648 (18633-18813) | |
| 200-342, gnl|mm7|chr10 (107731218-107731035) | |
| 200-342, gnl|Mm7|chr10 (107731048-107731190) | |
| 200-342, gnl|monDom2|scaffold_36 (13169861-13170044) | |
| 200-342, gnl|oryCun1|scaffold_205184 (56780-56966) | |
| 200-342, gnl|panTro1|chr10 (80259748-80259930) | |
| 200-342, gnl|rheMac2|chr11 (76766431-76766609) | |
| 200-342, gnl|rn3|chr7 (46996536-46996354) | |
| 200-342, gnl|xenTro1|scaffold_724 (10635-10830) |