Non-Coding RNA Search

Ss1.1-Emb1-C0005188_C24.5

Sequence:


               
               GGTGACATTTGAGCTGGGTCATTTAGTCTTCTGCGGGCAGCTGCCCGAGTGCTGCCTCGT
TTGAAATAAGCACATTTACAAGAGAATAGTGGAGCACATTCTCCTTGATGGATTGGATTG
ACAGTTTGGAAGTAACTCCCCAGAATGATGGCTTTGTTAGGTATTTGTTCTCCGAGAACC
CTACCTGCCACTCCCCTTCAGTGAATTGTGGCTAGAAAGCTGTCACATTAAGCTGTCACT
CAGGATATTTGCGAGAGGGGGGAGGGAGGAACAAATTATGGGCAGGACTAGGTATTTTCA
GAACAGTCTCCAACCCGGAAAGATTGTATTTCAGAGCGTTTAAAAATGAACACAACAGCC
TTTTAAAAGTTGTGCAAAAGGAAAATTGAATAATGAAAAGTTAATTAGGCTATGGAGGAT
TTTAAAAGCTAGGCATTCTGATTCATATCCACCTTAATATGTGAAGCTTTGTTAAAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGACATTTGAGCTGGGTCATTTAGTCTTCTGCGGGCAGCTGCCCGAGTGCTGCCTCGT
TTGAAATAAGCACATTTACAAGAGAATAGTGGAGCACATTCTCCTTGATGGATTGGATTG
ACAGTTTGGAAGTAACTCCCCAGAATGATGGCTTTGTTAGGTATTTGTTCTCCGAGAACC
CTACCTGCCACTCCCCTTCAGTGAATTGTGGCTAGAAAGCTGTCACATTAAGCTGTCACT
CAGGATATTTGCGAGAGGGGGGAGGGAGGAACAAATTATGGGCAGGACTAGGTATTTTCA
GAACAGTCTCCAACCCGGAAAGATTGTATTTCAGAGCGTTTAAAAATGAACACAACAGCC
TTTTAAAAGTTGTGCAAAAGGAAAATTGAATAATGAAAAGTTAATTAGGCTATGGAGGAT
TTTAAAAGCTAGGCATTCTGATTCATATCCACCTTAATATGTGAAGCTTTGTTAAAGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-276, + strand, RNAz p=0.989006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-276, + strand, RNAz p=0.989006

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-480, gnl|bosTau2|chr15 (36521719-36522202)
               

               
               1-480, gnl|Hg17|chr11 (27423220-27422740)
               

               
               1-480, gnl|Mm7|chr2 (109792989-109793458)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr15 (36521719-36522202)
               

               
               1-480, gnl|Hg17|chr11 (27423220-27422740)
               

               
               1-480, gnl|Mm7|chr2 (109792989-109793458)

	1-480, gnl\|bosTau2\|chr15 (36521719-36522202)
	1-480, gnl\|Hg17\|chr11 (27423220-27422740)
	1-480, gnl\|Mm7\|chr2 (109792989-109793458)