Non-Coding RNA Search

Ss1.1-Emb1-C0005191_B03.5

Sequence:


               
               GATGAAAGCCTGCTCAGTGTGGAGGGCAGGGGAAGGGATGAGGGGAAAATCAATACGTCT
TCGTGCATATTAATAGACTCCAGCAGGTGCTGGGAAATGTATGTTGCTGCATTGTTCCGG
CGCCCAGGCTGGAGAAGGCGGGGGGCGGGGGGGCTACTTCTCGCGGGCGCGGTGGGCAAA
TGCCTTTGCACTTTGGAGGGCTTTGCAAGCTCCCCAGGGAAAATAAAGGAGGAAAGAGCT
GCCATCCCCTTCTCCCGTTTTTTCCCCATTTTTAAATGAAAGAGAGTACCGGTGCAGACG
GCTTTTTAAGTTTCCTTCCTGGAAATTAACATGTGTGTATCAGAGCACCGCTGTCTCCTC
TAGGTAAGATATGCATGTCTGTGGGCAAGCAGAAAATAGCAGAATCTAGAGTCTCTGGCT
TGTGGAGTGCTTGGGAGCTGAAAAGCTCTTCTCCCTAGCTGGTTCTTTTGAGTGGGCCAA
GCCAGGGAAGCTGGTTTGTTTTTTTTTTTGAAGAGGCATGAAGGCTGTCCCTTCCCAAGA
CCCAAGTCTTTCTGACCCAAGTACCAGGCAGCAGTGGAGTGTGCAAGGAAGATGTCATGT
CCCTGGTGTTGGAAAACAGACTTTGCCTCCAACACAAAGGGAGTGGATTTGTGTCTGAGC
CAAATTATTTGAGGGTATATGTGGCATATTTATAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAAAGCCTGCTCAGTGTGGAGGGCAGGGGAAGGGATGAGGGGAAAATCAATACGTCT
TCGTGCATATTAATAGACTCCAGCAGGTGCTGGGAAATGTATGTTGCTGCATTGTTCCGG
CGCCCAGGCTGGAGAAGGCGGGGGGCGGGGGGGCTACTTCTCGCGGGCGCGGTGGGCAAA
TGCCTTTGCACTTTGGAGGGCTTTGCAAGCTCCCCAGGGAAAATAAAGGAGGAAAGAGCT
GCCATCCCCTTCTCCCGTTTTTTCCCCATTTTTAAATGAAAGAGAGTACCGGTGCAGACG
GCTTTTTAAGTTTCCTTCCTGGAAATTAACATGTGTGTATCAGAGCACCGCTGTCTCCTC
TAGGTAAGATATGCATGTCTGTGGGCAAGCAGAAAATAGCAGAATCTAGAGTCTCTGGCT
TGTGGAGTGCTTGGGAGCTGAAAAGCTCTTCTCCCTAGCTGGTTCTTTTGAGTGGGCCAA
GCCAGGGAAGCTGGTTTGTTTTTTTTTTTGAAGAGGCATGAAGGCTGTCCCTTCCCAAGA
CCCAAGTCTTTCTGACCCAAGTACCAGGCAGCAGTGGAGTGTGCAAGGAAGATGTCATGT
CCCTGGTGTTGGAAAACAGACTTTGCCTCCAACACAAAGGGAGTGGATTTGTGTCTGAGC
CAAATTATTTGAGGGTATATGTGGCATATTTATAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               41-196, - strand, RNAz p=0.986816
               

               
               428-533, + strand, RNAz p=0.631525

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-196, - strand, RNAz p=0.986816
               

               
               428-533, + strand, RNAz p=0.631525

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               57-144, + strand, RNAmicro p=0.999899

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               57-144, + strand, RNAmicro p=0.999899

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr22 (26621035-26620336)
               

               
               1-696, gnl|Hg17|chr3 (65557930-65557239)
               

               
               1-696, gnl|Mm7|chr6 (94000812-94000143)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr22 (26621035-26620336)
               

               
               1-696, gnl|Hg17|chr3 (65557930-65557239)
               

               
               1-696, gnl|Mm7|chr6 (94000812-94000143)

	41-196, - strand, RNAz p=0.986816
	428-533, + strand, RNAz p=0.631525

	1-696, gnl\|bosTau2\|chr22 (26621035-26620336)
	1-696, gnl\|Hg17\|chr3 (65557930-65557239)
	1-696, gnl\|Mm7\|chr6 (94000812-94000143)