Non-Coding RNA Search

Ss1.1-Emb1-C0005191_B24.5

Sequence:


               
               CGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGG
ACCAGAGCGAAAGCATTTGCCAAGAATGCTTTCATTAATCAAGAACGAAAGTCGGAGGTT
CGAAGACGATCAGATCCAGGTCTGCGGCAGAATACGCTTCTCTTGTCTTGAGGCAGCGAG
TTTGTCGTAACTTGTTACAGCAGACTCAAGAAACGTCTGGAACGTCCTACAGAAACGACT
TCAAGTCATTGGGACCCTGCACCCTCCGACTGAGCAAACGGAACTGTGGTCTTACCATAC
AACTTCCGGCGTCCTGGATTTTCAGCAGCTCTGTTCATATAGGACCATAGATACAGGAGA
GGTCACGGTTCCATTAATATCACCAGTAAAACCACTTACTACTCCCAGAGGACGCATTTG
TCTTTGTCACAAAATTAAAAATGACTTCCAAACCCAGCCAGCGCTGCAGAGTGGTTTCCT
GAGACCAAATTGGCCGGTTGTTGAAAGAGTGAGGAAGGGCTGCTCCAGAGGTTGCGGGTG
TACCCGTGGTGCAGACACACTGTCACCAGGGACTCATGCCAATGCACAGCAACGGAGAGG
TCACGCCACCCTCCCCTCTCTGAACTCTTGGAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGG
ACCAGAGCGAAAGCATTTGCCAAGAATGCTTTCATTAATCAAGAACGAAAGTCGGAGGTT
CGAAGACGATCAGATCCAGGTCTGCGGCAGAATACGCTTCTCTTGTCTTGAGGCAGCGAG
TTTGTCGTAACTTGTTACAGCAGACTCAAGAAACGTCTGGAACGTCCTACAGAAACGACT
TCAAGTCATTGGGACCCTGCACCCTCCGACTGAGCAAACGGAACTGTGGTCTTACCATAC
AACTTCCGGCGTCCTGGATTTTCAGCAGCTCTGTTCATATAGGACCATAGATACAGGAGA
GGTCACGGTTCCATTAATATCACCAGTAAAACCACTTACTACTCCCAGAGGACGCATTTG
TCTTTGTCACAAAATTAAAAATGACTTCCAAACCCAGCCAGCGCTGCAGAGTGGTTTCCT
GAGACCAAATTGGCCGGTTGTTGAAAGAGTGAGGAAGGGCTGCTCCAGAGGTTGCGGGTG
TACCCGTGGTGCAGACACACTGTCACCAGGGACTCATGCCAATGCACAGCAACGGAGAGG
TCACGCCACCCTCCCCTCTCTGAACTCTTGGAACTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               510-636, - strand, RNAz p=0.998363
               

               
               524-636, - strand, RNAz p=0.770265

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               510-636, - strand, RNAz p=0.998363
               

               
               524-636, - strand, RNAz p=0.770265

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               340-636, gnl|bosTau2|chr12 (15076691-15076992)
               

               
               340-636, gnl|canFam2|chr25 (14266306-14265921)
               

               
               340-636, gnl|dasNov1|scaffold_33601 (1203-824)
               

               
               340-636, gnl|echTel1|scaffold_105217 (451-842)
               

               
               340-636, gnl|galGal2|chr1 (167872764-167872390)
               

               
               340-636, gnl|hg17|chr13 (27914793-27915192)
               

               
               340-636, gnl|Hg17|chr13 (27914990-27915286)
               

               
               340-636, gnl|loxAfr1|scaffold_21851 (9575-9208)
               

               
               340-636, gnl|monDom2|scaffold_15 (37739083-37739454)
               

               
               340-636, gnl|oryCun1|scaffold_198574 (179037-179402)
               

               
               340-636, gnl|panTro1|chr14 (27097177-27097562)
               

               
               340-636, gnl|rheMac2|chr17 (8084176-8084553)
               

               
               340-636, gnl|rn3|chr12 (7931752-7931394)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               340-636, gnl|bosTau2|chr12 (15076691-15076992)
               

               
               340-636, gnl|canFam2|chr25 (14266306-14265921)
               

               
               340-636, gnl|dasNov1|scaffold_33601 (1203-824)
               

               
               340-636, gnl|echTel1|scaffold_105217 (451-842)
               

               
               340-636, gnl|galGal2|chr1 (167872764-167872390)
               

               
               340-636, gnl|hg17|chr13 (27914793-27915192)
               

               
               340-636, gnl|Hg17|chr13 (27914990-27915286)
               

               
               340-636, gnl|loxAfr1|scaffold_21851 (9575-9208)
               

               
               340-636, gnl|monDom2|scaffold_15 (37739083-37739454)
               

               
               340-636, gnl|oryCun1|scaffold_198574 (179037-179402)
               

               
               340-636, gnl|panTro1|chr14 (27097177-27097562)
               

               
               340-636, gnl|rheMac2|chr17 (8084176-8084553)
               

               
               340-636, gnl|rn3|chr12 (7931752-7931394)

	510-636, - strand, RNAz p=0.998363
	524-636, - strand, RNAz p=0.770265

	340-636, gnl\|bosTau2\|chr12 (15076691-15076992)
	340-636, gnl\|canFam2\|chr25 (14266306-14265921)
	340-636, gnl\|dasNov1\|scaffold_33601 (1203-824)
	340-636, gnl\|echTel1\|scaffold_105217 (451-842)
	340-636, gnl\|galGal2\|chr1 (167872764-167872390)
	340-636, gnl\|hg17\|chr13 (27914793-27915192)
	340-636, gnl\|Hg17\|chr13 (27914990-27915286)
	340-636, gnl\|loxAfr1\|scaffold_21851 (9575-9208)
	340-636, gnl\|monDom2\|scaffold_15 (37739083-37739454)
	340-636, gnl\|oryCun1\|scaffold_198574 (179037-179402)
	340-636, gnl\|panTro1\|chr14 (27097177-27097562)
	340-636, gnl\|rheMac2\|chr17 (8084176-8084553)
	340-636, gnl\|rn3\|chr12 (7931752-7931394)