Non-Coding RNA Search

Ss1.1-Emb1-C0005212_P20.5

Sequence:


               
               GCACATGTAGCTGAGGAAATGAATGCTGACGAAGCAGTAACTGAGGAATTTAATTCAGAT
GTGGGTCATTCTGGTAGTACCACATCTGTGAAAGTGAGAACTCAGGTGGACTTTTCTGAA
CAGATAGCAGTTGGGAAACTAGACAGAGGAAGTGATGAATCTGACCCAGGCTCATCGGAA
GAAATGAATGCTGAAACGGAAAATTGTGCAGAAACAGTGATTGGTGAGGTGACTGCTGAA
ACTGACCACATCAGTGAAACAGAGGATGAGGACTTCACTTCCAAAGCCTCTAAGCCTGTA
GAAGCCGAAACAAAGGGGTTGAATGTGGAAATGGACAGCTTTGTTCCTGACACACTAGAG
ATGAGCACTGAAGAAGGGAAGGTTGACCCTCATAAAACTGAAACAAATGTTGGACTTAAT
AAATTTGACAAAACCGAATTAGATGACAATCACATGGTAGTGAGAAATGATGGAATTTTA
CAGGAAGTTCACCATACTTCAGAGAAAGTGGAGGAGACACCACAATCTCTGACTTCTGAA
ACAGCTGTCTCTGAACTGATACCAGAAGATAATAATACATCTCCTCAGAAATTAAAGGAT
CTTGATCCTTTACTCATGTCAACAAATGACAGTCCTAGTGGCATGCAGACACGCTGTGTC
TGGTCCCCTTTGGCTTCTCCATCCACCAGCATTTTAAAGAGAGGACTAAAAAGACCCCAA
GAAGATGAGATCTCATCACCTGTTCATAAGGTTCGCCGTGTCTCCTTTGCAGATCCAATA
TACCAAGCAGGATTGGCAGATGACATTGATAGGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACATGTAGCTGAGGAAATGAATGCTGACGAAGCAGTAACTGAGGAATTTAATTCAGAT
GTGGGTCATTCTGGTAGTACCACATCTGTGAAAGTGAGAACTCAGGTGGACTTTTCTGAA
CAGATAGCAGTTGGGAAACTAGACAGAGGAAGTGATGAATCTGACCCAGGCTCATCGGAA
GAAATGAATGCTGAAACGGAAAATTGTGCAGAAACAGTGATTGGTGAGGTGACTGCTGAA
ACTGACCACATCAGTGAAACAGAGGATGAGGACTTCACTTCCAAAGCCTCTAAGCCTGTA
GAAGCCGAAACAAAGGGGTTGAATGTGGAAATGGACAGCTTTGTTCCTGACACACTAGAG
ATGAGCACTGAAGAAGGGAAGGTTGACCCTCATAAAACTGAAACAAATGTTGGACTTAAT
AAATTTGACAAAACCGAATTAGATGACAATCACATGGTAGTGAGAAATGATGGAATTTTA
CAGGAAGTTCACCATACTTCAGAGAAAGTGGAGGAGACACCACAATCTCTGACTTCTGAA
ACAGCTGTCTCTGAACTGATACCAGAAGATAATAATACATCTCCTCAGAAATTAAAGGAT
CTTGATCCTTTACTCATGTCAACAAATGACAGTCCTAGTGGCATGCAGACACGCTGTGTC
TGGTCCCCTTTGGCTTCTCCATCCACCAGCATTTTAAAGAGAGGACTAAAAAGACCCCAA
GAAGATGAGATCTCATCACCTGTTCATAAGGTTCGCCGTGTCTCCTTTGCAGATCCAATA
TACCAAGCAGGATTGGCAGATGACATTGATAGGCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               478-597, - strand, RNAz p=0.8001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               478-597, - strand, RNAz p=0.8001

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-752, gnl|bosTau2|chr2 (9204690-9205431)
               

               
               11-752, gnl|Hg17|chr2 (152147397-152148144)
               

               
               11-752, gnl|Mm7|chr2 (52119617-52120313)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-752, gnl|bosTau2|chr2 (9204690-9205431)
               

               
               11-752, gnl|Hg17|chr2 (152147397-152148144)
               

               
               11-752, gnl|Mm7|chr2 (52119617-52120313)

	11-752, gnl\|bosTau2\|chr2 (9204690-9205431)
	11-752, gnl\|Hg17\|chr2 (152147397-152148144)
	11-752, gnl\|Mm7\|chr2 (52119617-52120313)