Ss1.1-Emb1-C0005216_E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGGCCAGCGAGTCATCTCCATGTATGCCGAGACGGCCATTACCCTGCTGCTGCCCCA GCTGGAGCAAGGCCTCTTTGATGACCTCTGGAGAATAAGGTTCAGCTCTGTTCAGCTCCT TGGGGATCTCCTCTTCCACATCTCAGGAGTCACTGGGAAGATGACCACAGAAACTGCCTC TGAAGACGATAACTTTGGAACTGCCCAGTCCAACAAGGCGATCATCACTGCCCTGGGGGT AGATCGGCGGAATCGGGTGTTGGCAGGGCTGTACATGGGCCGCTCTGACACCCAGCTGGT TGTGCGACAAGCATCCCTGCATGTTTGGAAGATCGTGGTCTCCAATACGCCCCGCACCTT ACGTGAGATCCTGCCCACCCTCTTTGGGCTCCTGCTGAGTTTCCTGGCCAGCACATGTGC AGATAAGAGAACAATTGCAGCCAGGACACTGGGAGATCTTGTCCGGAAGTTAGGGGAGAA AATCCTACCAGAGATCATCCCCATCCTTGAGGAAGGCCTAAGGTCTCAGAAGAGCGACGA GAGGCAGGGCGTGTGCATCGGGCTGAGCGAGATCATGAAGTCCACCAGCCGGGACGCCGT GCTGTATTTCTCTGAGTCCCTTGTGCCCACGGCGAGGAAGGCCTTGTGTGACCCACTGGA GGAGGTCAGAGAGGCGGCGGCCAAGACCTTCGAGCAGCTGCATTCCACCATCGGCCACCA GGCCCTGGAGGACATCCTCCCATTTTTACTGAAGCAGCTGGATGATGAGGAGGTGTCAGA ATTTGCCTTGGACGGTCTGAAGCAAGTGATGGCCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGGCCAGCGAGTCATCTCCATGTATGCCGAGACGGCCATTACCCTGCTGCTGCCCCA GCTGGAGCAAGGCCTCTTTGATGACCTCTGGAGAATAAGGTTCAGCTCTGTTCAGCTCCT TGGGGATCTCCTCTTCCACATCTCAGGAGTCACTGGGAAGATGACCACAGAAACTGCCTC TGAAGACGATAACTTTGGAACTGCCCAGTCCAACAAGGCGATCATCACTGCCCTGGGGGT AGATCGGCGGAATCGGGTGTTGGCAGGGCTGTACATGGGCCGCTCTGACACCCAGCTGGT TGTGCGACAAGCATCCCTGCATGTTTGGAAGATCGTGGTCTCCAATACGCCCCGCACCTT ACGTGAGATCCTGCCCACCCTCTTTGGGCTCCTGCTGAGTTTCCTGGCCAGCACATGTGC AGATAAGAGAACAATTGCAGCCAGGACACTGGGAGATCTTGTCCGGAAGTTAGGGGAGAA AATCCTACCAGAGATCATCCCCATCCTTGAGGAAGGCCTAAGGTCTCAGAAGAGCGACGA GAGGCAGGGCGTGTGCATCGGGCTGAGCGAGATCATGAAGTCCACCAGCCGGGACGCCGT GCTGTATTTCTCTGAGTCCCTTGTGCCCACGGCGAGGAAGGCCTTGTGTGACCCACTGGA GGAGGTCAGAGAGGCGGCGGCCAAGACCTTCGAGCAGCTGCATTCCACCATCGGCCACCA GGCCCTGGAGGACATCCTCCCATTTTTACTGAAGCAGCTGGATGATGAGGAGGTGTCAGA ATTTGCCTTGGACGGTCTGAAGCAAGTGATGGCCAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 434-552, + strand, RNAz p=0.776217 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 434-552, + strand, RNAz p=0.776217 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 216-433, gnl|bosTau2|chr17 (38505530-38505747) | |
| 216-433, gnl|canFam2|chr26 (19129828-19130059) | |
| 216-433, gnl|dasNov1|scaffold_1641 (39960-40188) | |
| 216-433, gnl|echTel1|scaffold_293196 (13394-13626) | |
| 216-433, gnl|fr1|chrUn (56610224-56610457) | |
| 216-433, gnl|galGal2|chr15 (9390873-9390627) | |
| 216-433, gnl|hg17|chr12 (119043021-119043254) | |
| 216-433, gnl|Hg17|chr12 (119043248-119043031) | |
| 216-433, gnl|loxAfr1|scaffold_2359 (24536-24769) | |
| 216-433, gnl|mm7|chr5 (114833172-114832939) | |
| 216-433, gnl|Mm7|chr5 (114832943-114833160) | |
| 216-433, gnl|monDom2|scaffold_101 (135931-135698) | |
| 216-433, gnl|oryCun1|scaffold_101109 (4273-4040) | |
| 216-433, gnl|panTro1|chr10 (122043177-122043410) | |
| 216-433, gnl|rheMac2|chr11 (121143857-121144090) | |
| 216-433, gnl|rn3|chr12 (42127972-42128205) | |
| 216-433, gnl|tetNig1|chr12 (11752146-11752379) | |
| 216-433, gnl|xenTro1|scaffold_9 (4633198-4633427) | |
| 434-601, gnl|bosTau2|chr17 (38506773-38506940) | |
| 434-601, gnl|canFam2|chr26 (19127710-19127874) | |
| 434-601, gnl|dasNov1|scaffold_1641 (38681-38858) | |
| 434-601, gnl|echTel1|scaffold_293196 (12378-12555) | |
| 434-601, gnl|fr1|chrUn (56609946-56610123) | |
| 434-601, gnl|galGal2|chr15 (9391366-9391193) | |
| 434-601, gnl|hg17|chr12 (119041374-119041551) | |
| 434-601, gnl|Hg17|chr12 (119041547-119041380) | |
| 434-601, gnl|loxAfr1|scaffold_2359 (23274-23451) | |
| 434-601, gnl|mm7|chr5 (114834684-114834507) | |
| 434-601, gnl|Mm7|chr5 (114834509-114834676) | |
| 434-601, gnl|monDom2|scaffold_101 (136765-136588) | |
| 434-601, gnl|oryCun1|scaffold_204309 (117027-116850) | |
| 434-601, gnl|panTro1|chr10 (122041530-122041707) | |
| 434-601, gnl|rheMac2|chr11 (121142222-121142399) | |
| 434-601, gnl|rn3|chr12 (42126317-42126494) | |
| 434-601, gnl|tetNig1|chr12 (11751862-11752034) | |
| 434-601, gnl|xenTro1|scaffold_9 (4632533-4632706) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 216-433, gnl|bosTau2|chr17 (38505530-38505747) | |
| 216-433, gnl|canFam2|chr26 (19129828-19130059) | |
| 216-433, gnl|dasNov1|scaffold_1641 (39960-40188) | |
| 216-433, gnl|echTel1|scaffold_293196 (13394-13626) | |
| 216-433, gnl|fr1|chrUn (56610224-56610457) | |
| 216-433, gnl|galGal2|chr15 (9390873-9390627) | |
| 216-433, gnl|hg17|chr12 (119043021-119043254) | |
| 216-433, gnl|Hg17|chr12 (119043248-119043031) | |
| 216-433, gnl|loxAfr1|scaffold_2359 (24536-24769) | |
| 216-433, gnl|mm7|chr5 (114833172-114832939) | |
| 216-433, gnl|Mm7|chr5 (114832943-114833160) | |
| 216-433, gnl|monDom2|scaffold_101 (135931-135698) | |
| 216-433, gnl|oryCun1|scaffold_101109 (4273-4040) | |
| 216-433, gnl|panTro1|chr10 (122043177-122043410) | |
| 216-433, gnl|rheMac2|chr11 (121143857-121144090) | |
| 216-433, gnl|rn3|chr12 (42127972-42128205) | |
| 216-433, gnl|tetNig1|chr12 (11752146-11752379) | |
| 216-433, gnl|xenTro1|scaffold_9 (4633198-4633427) | |
| 434-601, gnl|bosTau2|chr17 (38506773-38506940) | |
| 434-601, gnl|canFam2|chr26 (19127710-19127874) | |
| 434-601, gnl|dasNov1|scaffold_1641 (38681-38858) | |
| 434-601, gnl|echTel1|scaffold_293196 (12378-12555) | |
| 434-601, gnl|fr1|chrUn (56609946-56610123) | |
| 434-601, gnl|galGal2|chr15 (9391366-9391193) | |
| 434-601, gnl|hg17|chr12 (119041374-119041551) | |
| 434-601, gnl|Hg17|chr12 (119041547-119041380) | |
| 434-601, gnl|loxAfr1|scaffold_2359 (23274-23451) | |
| 434-601, gnl|mm7|chr5 (114834684-114834507) | |
| 434-601, gnl|Mm7|chr5 (114834509-114834676) | |
| 434-601, gnl|monDom2|scaffold_101 (136765-136588) | |
| 434-601, gnl|oryCun1|scaffold_204309 (117027-116850) | |
| 434-601, gnl|panTro1|chr10 (122041530-122041707) | |
| 434-601, gnl|rheMac2|chr11 (121142222-121142399) | |
| 434-601, gnl|rn3|chr12 (42126317-42126494) | |
| 434-601, gnl|tetNig1|chr12 (11751862-11752034) | |
| 434-601, gnl|xenTro1|scaffold_9 (4632533-4632706) |