Non-Coding RNA Search

Ss1.1-Emb1-C0005217_C16.5

Sequence:


               
               GAAGAAGTTAAAAGGTAGCCCTTGATCTGGGCCTGGAAGGACAAGGATGACAGTGCCAGG
TGGCAGGAAAGAAGATAAGGGCATTGCAGACAGAGGAGATCCGATGCTGTAATGATGGAA
GTGGTTTTGCACCAGCCCAGTATTCTGCTAGTGTGGTAGTTGAGGCCAGAAGGCAGAGAG
GGAGATTTGGATGGACTGAGGGTTGGCAGTGCCACATTAAGGTAGCCTAATAAATGACCC
TACAATGGGATGCTTGCTACTAGTTGTTCCAACAGGAGCCAGCAATGATACCGACTGAAG
GGAAGGCCAAAGCTGCTTATGCTGAACACAAACACTGAGGTAAACTGTGGAAACCACTTT
GTCATAATCAATATTAATGTGGCTTGGTGGCCCACAAGGGGCTGACCCCTAAGAAAACAA
GCTGTCTTTAGAGCTCAGTTAGAGCTACAGAGAAGCCAAGGAATTCAACAGTTAATCCTG
AAGGACTCTGAGGACTTACTCATTTGGGAGACAATACATCTCCAAGCCTTAACTTAGAAA
AATTTAAAAGGCCTCAGTGGATTATCAAGAGATTCAGCATGTATAAGCAGAAATATGTAA
TGTGTAAGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAAGTTAAAAGGTAGCCCTTGATCTGGGCCTGGAAGGACAAGGATGACAGTGCCAGG
TGGCAGGAAAGAAGATAAGGGCATTGCAGACAGAGGAGATCCGATGCTGTAATGATGGAA
GTGGTTTTGCACCAGCCCAGTATTCTGCTAGTGTGGTAGTTGAGGCCAGAAGGCAGAGAG
GGAGATTTGGATGGACTGAGGGTTGGCAGTGCCACATTAAGGTAGCCTAATAAATGACCC
TACAATGGGATGCTTGCTACTAGTTGTTCCAACAGGAGCCAGCAATGATACCGACTGAAG
GGAAGGCCAAAGCTGCTTATGCTGAACACAAACACTGAGGTAAACTGTGGAAACCACTTT
GTCATAATCAATATTAATGTGGCTTGGTGGCCCACAAGGGGCTGACCCCTAAGAAAACAA
GCTGTCTTTAGAGCTCAGTTAGAGCTACAGAGAAGCCAAGGAATTCAACAGTTAATCCTG
AAGGACTCTGAGGACTTACTCATTTGGGAGACAATACATCTCCAAGCCTTAACTTAGAAA
AATTTAAAAGGCCTCAGTGGATTATCAAGAGATTCAGCATGTATAAGCAGAAATATGTAA
TGTGTAAGGACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               4-191, - strand, RNAz p=0.98471
               

               
               228-344, - strand, RNAz p=0.965311

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-191, - strand, RNAz p=0.98471
               

               
               228-344, - strand, RNAz p=0.965311

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-612, gnl|bosTau2|chr10 (34453985-34454590)
               

               
               4-612, gnl|Hg17|chr15 (55934863-55934228)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-612, gnl|bosTau2|chr10 (34453985-34454590)
               

               
               4-612, gnl|Hg17|chr15 (55934863-55934228)

	4-191, - strand, RNAz p=0.98471
	228-344, - strand, RNAz p=0.965311

	4-612, gnl\|bosTau2\|chr10 (34453985-34454590)
	4-612, gnl\|Hg17\|chr15 (55934863-55934228)