Non-Coding RNA Search

Ss1.1-End1-UMC-pd10en3-012-h12.3

Sequence:


               
               CCGTGGGTTCTGGTTCCTTGCCCCTTGTGTAGTACCCTGTGTTTTTGTGGTGTTCTCTCC
TGAGGCATGAAAATGATCATTATCCAATTTGTATTTCCTTGGTACATATTTTAAAAACAC
AGTCATTGCCTTTACAATTCAGAAATAAAGTTTGGCAAAGCCTATTTTGTAAACAAGTTC
ATTTTATAATGTAAAAAAAAAAAATTACTCTAACCTTGACTTGTTATTTGCACTTTCATA
GTCTATACTTGATACATTCCCACTTTATATACAGTAGGACTCTACAAACGTGTAGATGTT
TGGCCAAATGAATGCTGTTAATAATATGTAAAATTCTTTGATTAAACATTTATTACTTAA
AAAAAAAAAAAAAGGGGGGGCCCTTTTAAAATTTTCCCTGGGGGGGCCCAACTTTCCCCC
CCCCCCTTTTTTTTGAAAAAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTGGGTTCTGGTTCCTTGCCCCTTGTGTAGTACCCTGTGTTTTTGTGGTGTTCTCTCC
TGAGGCATGAAAATGATCATTATCCAATTTGTATTTCCTTGGTACATATTTTAAAAACAC
AGTCATTGCCTTTACAATTCAGAAATAAAGTTTGGCAAAGCCTATTTTGTAAACAAGTTC
ATTTTATAATGTAAAAAAAAAAAATTACTCTAACCTTGACTTGTTATTTGCACTTTCATA
GTCTATACTTGATACATTCCCACTTTATATACAGTAGGACTCTACAAACGTGTAGATGTT
TGGCCAAATGAATGCTGTTAATAATATGTAAAATTCTTTGATTAAACATTTATTACTTAA
AAAAAAAAAAAAAGGGGGGGCCCTTTTAAAATTTTCCCTGGGGGGGCCCAACTTTCCCCC
CCCCCCTTTTTTTTGAAAAAGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               195-314, - strand, RNAz p=0.635687

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-314, - strand, RNAz p=0.635687

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-361, gnl|bosTau2|chr4 (1297198-1297549)
               

               
               2-361, gnl|Hg17|chr7 (91674981-91675345)
               

               
               2-361, gnl|Mm7|chr5 (3696776-3696426)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-361, gnl|bosTau2|chr4 (1297198-1297549)
               

               
               2-361, gnl|Hg17|chr7 (91674981-91675345)
               

               
               2-361, gnl|Mm7|chr5 (3696776-3696426)

	2-361, gnl\|bosTau2\|chr4 (1297198-1297549)
	2-361, gnl\|Hg17\|chr7 (91674981-91675345)
	2-361, gnl\|Mm7\|chr5 (3696776-3696426)