Non-Coding RNA Search

Ss1.1-End1-UMC-pd3end3-016-f10.3

Sequence:


               
               TGTACTGTGTGTGGTACCATTTCTCTTTCAGAGGTCAGAGAGCATCAGACCTGCATTGAA
CAGTCCTGCAGAAAGGCCGAACGGCGACCAGGAGGAGGGGGAAGCTTCTGCCCAGGTAAG
GCCTGTGTGGTAGAGAGAGCATGCGGGTTGGGGAGCAGTGGGCCACCTGGTGATGGTCTC
ATCGTGTGCTGATGTCTGTGCATCAGGCATCTTAGCATCTAAGCATCTAAGGTTAACAAA
CTTTGCTGTGCTGGGGCGTGGCCTGCAGCCCTCTCCCTGGGCACTGCTGCGGTGAGCTTG
AGTGGTAGCGCTCAGAAGGGCAGGGTGAGGCTGGGCCCAGGACTCAGGGTGAGTGCTGCA
CCCCACAGGGCTCCACTCTGTAGAGCTGAAATCATCAGGGTTTTCTGTAGAGCTGAAATC
ATCAGGATTTCCTCCAGACCTCACTTGTCCAGCTCAGCATATGCAGGAACTTCCATGCAC
TTCACAAAAATGAGACCCTCTGCATGGGGAAGGGTAGTTACCTTGGGAACCAAATTTGCC
AAGATATCCACTCTGGGTGACCTGGGGTTGCTGCCCCCATGCAAAATCAACTCCCCTCCT
GGTTTCTAGGGCAGAGGTACCCCCAACCCCACAGCCTGGAGATTCCAGTTCATGTCTCTT
TTCTGTAATTTCCATTTGCTTAATCAATTACCATTGTTTCTAGAAACTTTAAGAGACGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTACTGTGTGTGGTACCATTTCTCTTTCAGAGGTCAGAGAGCATCAGACCTGCATTGAA
CAGTCCTGCAGAAAGGCCGAACGGCGACCAGGAGGAGGGGGAAGCTTCTGCCCAGGTAAG
GCCTGTGTGGTAGAGAGAGCATGCGGGTTGGGGAGCAGTGGGCCACCTGGTGATGGTCTC
ATCGTGTGCTGATGTCTGTGCATCAGGCATCTTAGCATCTAAGCATCTAAGGTTAACAAA
CTTTGCTGTGCTGGGGCGTGGCCTGCAGCCCTCTCCCTGGGCACTGCTGCGGTGAGCTTG
AGTGGTAGCGCTCAGAAGGGCAGGGTGAGGCTGGGCCCAGGACTCAGGGTGAGTGCTGCA
CCCCACAGGGCTCCACTCTGTAGAGCTGAAATCATCAGGGTTTTCTGTAGAGCTGAAATC
ATCAGGATTTCCTCCAGACCTCACTTGTCCAGCTCAGCATATGCAGGAACTTCCATGCAC
TTCACAAAAATGAGACCCTCTGCATGGGGAAGGGTAGTTACCTTGGGAACCAAATTTGCC
AAGATATCCACTCTGGGTGACCTGGGGTTGCTGCCCCCATGCAAAATCAACTCCCCTCCT
GGTTTCTAGGGCAGAGGTACCCCCAACCCCACAGCCTGGAGATTCCAGTTCATGTCTCTT
TTCTGTAATTTCCATTTGCTTAATCAATTACCATTGTTTCTAGAAACTTTAAGAGACGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-192, + strand, RNAz p=0.64474

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-192, + strand, RNAz p=0.64474

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               80-206, + strand, RNAmicro p=0.93988

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               80-206, + strand, RNAmicro p=0.93988

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-200, gnl|bosTau2|chr18 (25334827-25334634)
               

               
               1-200, gnl|Hg17|chr16 (54958971-54958765)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-200, gnl|bosTau2|chr18 (25334827-25334634)
               

               
               1-200, gnl|Hg17|chr16 (54958971-54958765)

	1-200, gnl\|bosTau2\|chr18 (25334827-25334634)
	1-200, gnl\|Hg17\|chr16 (54958971-54958765)