Non-Coding RNA Search

Ss1.1-End3-UMC-pd6end2-013-e07.3

Sequence:


               
               TAAAGCCTTTGTTAAGTTGTCCCTATAATATATCCTTTATGTCTGTACTTAGATGAGACT
GTAACCCCTAGAGGAGCAGAGCCAAGTTGTTAGCTCGCATTCATGGTTCTAAATTCAGTG
CTCTGAGCAGATCGGGTTTATCCTTATGACGATGATGAAGAGGAGTTGGAAGATTTTTCT
TCCATTATATCAAATGCAACTACTGAGTTTTATAGGCTCCCTCTTAGAATTTTCTGGATG
GTCTCCTCTTTTTTTCATTTGAATACCTTACTCCCCTGGAGTAAAATGCAGGATTGAGAG
GTAAATGATCTGAAAACAAATGTACGGTAATACATTCACTTTGGCTTACAAAAATAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAGCCTTTGTTAAGTTGTCCCTATAATATATCCTTTATGTCTGTACTTAGATGAGACT
GTAACCCCTAGAGGAGCAGAGCCAAGTTGTTAGCTCGCATTCATGGTTCTAAATTCAGTG
CTCTGAGCAGATCGGGTTTATCCTTATGACGATGATGAAGAGGAGTTGGAAGATTTTTCT
TCCATTATATCAAATGCAACTACTGAGTTTTATAGGCTCCCTCTTAGAATTTTCTGGATG
GTCTCCTCTTTTTTTCATTTGAATACCTTACTCCCCTGGAGTAAAATGCAGGATTGAGAG
GTAAATGATCTGAAAACAAATGTACGGTAATACATTCACTTTGGCTTACAAAAATAAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               143-257, + strand, RNAz p=0.54983

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-257, + strand, RNAz p=0.54983

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-360, gnl|bosTau2|chr17 (19006416-19006767)
               

               
               2-360, gnl|canFam2|chr19 (15664294-15663521)
               

               
               2-360, gnl|dasNov1|scaffold_42787 (12958-12105)
               

               
               2-360, gnl|echTel1|scaffold_289428 (47784-46902)
               

               
               2-360, gnl|hg17|chr4 (129608914-129609798)
               

               
               2-360, gnl|Hg17|chr4 (129608964-129609313)
               

               
               2-360, gnl|loxAfr1|scaffold_3890 (129482-130348)
               

               
               2-360, gnl|mm7|chr3 (40899043-40899885)
               

               
               2-360, gnl|Mm7|chr3 (40899096-40899434)
               

               
               2-360, gnl|oryCun1|scaffold_208011 (65791-64938)
               

               
               2-360, gnl|panTro1|chr3 (146529951-146530835)
               

               
               2-360, gnl|rheMac2|chr5 (120666136-120667023)
               

               
               2-360, gnl|rn3|chr2 (128041063-128041914)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-360, gnl|bosTau2|chr17 (19006416-19006767)
               

               
               2-360, gnl|canFam2|chr19 (15664294-15663521)
               

               
               2-360, gnl|dasNov1|scaffold_42787 (12958-12105)
               

               
               2-360, gnl|echTel1|scaffold_289428 (47784-46902)
               

               
               2-360, gnl|hg17|chr4 (129608914-129609798)
               

               
               2-360, gnl|Hg17|chr4 (129608964-129609313)
               

               
               2-360, gnl|loxAfr1|scaffold_3890 (129482-130348)
               

               
               2-360, gnl|mm7|chr3 (40899043-40899885)
               

               
               2-360, gnl|Mm7|chr3 (40899096-40899434)
               

               
               2-360, gnl|oryCun1|scaffold_208011 (65791-64938)
               

               
               2-360, gnl|panTro1|chr3 (146529951-146530835)
               

               
               2-360, gnl|rheMac2|chr5 (120666136-120667023)
               

               
               2-360, gnl|rn3|chr2 (128041063-128041914)

	2-360, gnl\|bosTau2\|chr17 (19006416-19006767)
	2-360, gnl\|canFam2\|chr19 (15664294-15663521)
	2-360, gnl\|dasNov1\|scaffold_42787 (12958-12105)
	2-360, gnl\|echTel1\|scaffold_289428 (47784-46902)
	2-360, gnl\|hg17\|chr4 (129608914-129609798)
	2-360, gnl\|Hg17\|chr4 (129608964-129609313)
	2-360, gnl\|loxAfr1\|scaffold_3890 (129482-130348)
	2-360, gnl\|mm7\|chr3 (40899043-40899885)
	2-360, gnl\|Mm7\|chr3 (40899096-40899434)
	2-360, gnl\|oryCun1\|scaffold_208011 (65791-64938)
	2-360, gnl\|panTro1\|chr3 (146529951-146530835)
	2-360, gnl\|rheMac2\|chr5 (120666136-120667023)
	2-360, gnl\|rn3\|chr2 (128041063-128041914)