Non-Coding RNA Search

Ss1.1-End4-UMC-pd12_14end-008-h06.3

Sequence:


               
               CCGCCTCCTGGTTCTGGACCTGTTTGCAGAGAGCCAGCCTGTGTACGTCCGCACAGCCTC
CTTCCTGGGCCAGCCCTTCATCTGGTGCATGCTGCATAACTTTGGGGGCAACCACGGCCT
GTTTGGGGCCCTGGAGTCTGTGAACCAAGGCCCCGCAGCCGCCCGCCTCTTCCCCAACTC
CACCATGGCAGGCACAGGCATGGCCCCTGAGGGCATCGGCCAGAACGAGGTGGTCTACGC
CCTCATGGCTGAGCTGGGCTGGCGGAAGGACCCAGTGGCAGATTTGGGGGCCTGGGTGAC
CAGATTTGCGGCCCGGCGGTACGGGGTCTCCCAGGGGGATGCGGAGGCGGCCTGGAGGCT
GCTTCTCAGGAGTGTCTACAACTGCTCTGGTGAGGGCTGCACCGGACACAATCGCAGCCC
CCTGGTCAGGCGACCATCCCTCCAGATGGCGACCACCGTCTGGTACAACCAATCAGATGT
ATTTGAAGCCTGGCGGCTGCTGCTAAAAGCCACTCCCACCCTGGCCAGCAGCCCAGCCTT
CCGCTATGACCTGGTGGACATCACTCGCCAGGCGGTCCAGGAGCTGGTCAGCTTATACTA
TGAAGAGGCGAGGAGGGCCTATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCTCCTGGTTCTGGACCTGTTTGCAGAGAGCCAGCCTGTGTACGTCCGCACAGCCTC
CTTCCTGGGCCAGCCCTTCATCTGGTGCATGCTGCATAACTTTGGGGGCAACCACGGCCT
GTTTGGGGCCCTGGAGTCTGTGAACCAAGGCCCCGCAGCCGCCCGCCTCTTCCCCAACTC
CACCATGGCAGGCACAGGCATGGCCCCTGAGGGCATCGGCCAGAACGAGGTGGTCTACGC
CCTCATGGCTGAGCTGGGCTGGCGGAAGGACCCAGTGGCAGATTTGGGGGCCTGGGTGAC
CAGATTTGCGGCCCGGCGGTACGGGGTCTCCCAGGGGGATGCGGAGGCGGCCTGGAGGCT
GCTTCTCAGGAGTGTCTACAACTGCTCTGGTGAGGGCTGCACCGGACACAATCGCAGCCC
CCTGGTCAGGCGACCATCCCTCCAGATGGCGACCACCGTCTGGTACAACCAATCAGATGT
ATTTGAAGCCTGGCGGCTGCTGCTAAAAGCCACTCCCACCCTGGCCAGCAGCCCAGCCTT
CCGCTATGACCTGGTGGACATCACTCGCCAGGCGGTCCAGGAGCTGGTCAGCTTATACTA
TGAAGAGGCGAGGAGGGCCTATCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-319, - strand, RNAz p=0.917032
               

               
               400-599, - strand, RNAz p=0.65547

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, - strand, RNAz p=0.917032
               

               
               400-599, - strand, RNAz p=0.65547

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr19 (38835795-38835172)
               

               
               1-624, gnl|Hg17|chr17 (37948678-37949301)
               

               
               1-624, gnl|Mm7|chr11 (101185386-101186009)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr19 (38835795-38835172)
               

               
               1-624, gnl|Hg17|chr17 (37948678-37949301)
               

               
               1-624, gnl|Mm7|chr11 (101185386-101186009)

	200-319, - strand, RNAz p=0.917032
	400-599, - strand, RNAz p=0.65547

	1-624, gnl\|bosTau2\|chr19 (38835795-38835172)
	1-624, gnl\|Hg17\|chr17 (37948678-37949301)
	1-624, gnl\|Mm7\|chr11 (101185386-101186009)