Non-Coding RNA Search

Ss1.1-Fat1-C94623.5

Sequence:


               
               AAGGGCACTGCAAGTGATGCTGTCAGTCTCTCAAACCTCACCCAGCCCAGCTTGGCAGCC
ACTGATCAGCAACAAGAAGAGCACTACCGTATAGAAACCCGAGTCTCCTCCTCCTGCTTA
GACTTGCCTGATAGTACCGAAGAGAAGGGGGCCCCTATAGAAACCTTGGGTTATCATAAT
GCATCCAATAGGAGGATGTCAGGGGAGCCAATACAGACTGTAGAGTCCATCCGAGTTCCT
GGGAAGGGAAATAGAGGACATGGGCGTGAGGCTTCAAGGGTGGGTTGGTTTGATTTGAGC
ACCTCAGGCGGCTCGTTTGACAATGGTCCCTCAAGTGCCTCTGAGTTGGCATCCCTTGGG
GGTGGGGGCAGCGGAGGCCTCACTGGCTTTAAAACAGCACCGTACAAGGAACGGGCACCC
CAATTTCAGGAAAGTGTCGGCAGCTTTCGTTCCAACAGTTTCAACTCAACATTTGAGCAT
CATCTCCCCCCGTCCCCCTTGGAACATGGGACACCCTTCCAGAGAGAGCCAGTGGGGCCA
TCATCTGCCCCACCTGCCCCTTCTAAGGATCATGGTGGTATCTTCTCTCGAGATGCACCC
ACTCATCTACCCTCTGTGGATCTTTCGAACCCCTTCACAAAGGAGGCGGCGCTGGCCCAT
GCTGCCCCACCTCCTGGAGAGCACAGCGGAGTTCCTTTCCCCACCCCACCCCCTCCTCCA
CCCCCTGGGGAACATAGCAGCAGTGCTGGGAGTGGTGTCCCTTTTTCTACTCCACCTCCT
CCTCCACCTACCGTTGACCATTCTGGGGTTGTACCCTTCCCAACCCCACCACTGGCAGAG
CACGGAGTGGCAGGGGCTGTGGCAGTATTTCCCAAGGACCATAGTTCCCTCCTTCAAGGG
ACCTTGGCTGATCATTTTGGGGTGCTCCCAGGACCCAGGGACCATGGGGGCCCTACCCAG
CGGGACCTCAACGGCCCCGGCCTTAGCCGTGTACGCGAGAGCCTCAGCCTACCTTCCCAT
TCTCTGGAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGCACTGCAAGTGATGCTGTCAGTCTCTCAAACCTCACCCAGCCCAGCTTGGCAGCC
ACTGATCAGCAACAAGAAGAGCACTACCGTATAGAAACCCGAGTCTCCTCCTCCTGCTTA
GACTTGCCTGATAGTACCGAAGAGAAGGGGGCCCCTATAGAAACCTTGGGTTATCATAAT
GCATCCAATAGGAGGATGTCAGGGGAGCCAATACAGACTGTAGAGTCCATCCGAGTTCCT
GGGAAGGGAAATAGAGGACATGGGCGTGAGGCTTCAAGGGTGGGTTGGTTTGATTTGAGC
ACCTCAGGCGGCTCGTTTGACAATGGTCCCTCAAGTGCCTCTGAGTTGGCATCCCTTGGG
GGTGGGGGCAGCGGAGGCCTCACTGGCTTTAAAACAGCACCGTACAAGGAACGGGCACCC
CAATTTCAGGAAAGTGTCGGCAGCTTTCGTTCCAACAGTTTCAACTCAACATTTGAGCAT
CATCTCCCCCCGTCCCCCTTGGAACATGGGACACCCTTCCAGAGAGAGCCAGTGGGGCCA
TCATCTGCCCCACCTGCCCCTTCTAAGGATCATGGTGGTATCTTCTCTCGAGATGCACCC
ACTCATCTACCCTCTGTGGATCTTTCGAACCCCTTCACAAAGGAGGCGGCGCTGGCCCAT
GCTGCCCCACCTCCTGGAGAGCACAGCGGAGTTCCTTTCCCCACCCCACCCCCTCCTCCA
CCCCCTGGGGAACATAGCAGCAGTGCTGGGAGTGGTGTCCCTTTTTCTACTCCACCTCCT
CCTCCACCTACCGTTGACCATTCTGGGGTTGTACCCTTCCCAACCCCACCACTGGCAGAG
CACGGAGTGGCAGGGGCTGTGGCAGTATTTCCCAAGGACCATAGTTCCCTCCTTCAAGGG
ACCTTGGCTGATCATTTTGGGGTGCTCCCAGGACCCAGGGACCATGGGGGCCCTACCCAG
CGGGACCTCAACGGCCCCGGCCTTAGCCGTGTACGCGAGAGCCTCAGCCTACCTTCCCAT
TCTCTGGAGCAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               157-276, - strand, RNAz p=0.678124
               

               
               437-990, + strand, RNAz p=0.986054

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-276, - strand, RNAz p=0.678124
               

               
               437-990, + strand, RNAz p=0.986054

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               687-883, - strand, RNAmicro p=0.996154

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               687-883, - strand, RNAmicro p=0.996154

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               726-697, BX110499 Soares placenta Nb2HP Homo sapiens cDNA clone 
(emb|BX110499.1|), blast E-value=0, identity=94.15% 
               

               
               726-485, AGENCOURT_6688325 NIH_MGC_121 Homo sapiens cDNA clone IMAGE 
(gb|BM927276.1|), blast E-value=4e-17, identity=100% 
               

               
               726-990, AGENCOURT_10333251 NIH_MGC_40 Homo sapiens cDNA clone IMAGE 
(gb|BU552454.1|), blast E-value=0, identity=93.96% 
               

               
               727-697, 4082686 BARC 9BOV Bos taurus cDNA clone 9BOV20_N23 5', mRNA 
(gb|CK967299.1|), blast E-value=0, identity=94.79% 
               

               
               726-697, 17000600024111 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN401181.1|), blast E-value=0, identity=94.09% 
               

               
               726-697, od06d10.y1 Human keratoconus cornea, unamplified, (od/oe) Homo 
(gb|CV569521.1|), blast E-value=0, identity=92.91%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               726-697, BX110499 Soares placenta Nb2HP Homo sapiens cDNA clone 
(emb|BX110499.1|), blast E-value=0, identity=94.15% 
               

               
               726-485, AGENCOURT_6688325 NIH_MGC_121 Homo sapiens cDNA clone IMAGE 
(gb|BM927276.1|), blast E-value=4e-17, identity=100% 
               

               
               726-990, AGENCOURT_10333251 NIH_MGC_40 Homo sapiens cDNA clone IMAGE 
(gb|BU552454.1|), blast E-value=0, identity=93.96% 
               

               
               727-697, 4082686 BARC 9BOV Bos taurus cDNA clone 9BOV20_N23 5', mRNA 
(gb|CK967299.1|), blast E-value=0, identity=94.79% 
               

               
               726-697, 17000600024111 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN401181.1|), blast E-value=0, identity=94.09% 
               

               
               726-697, od06d10.y1 Human keratoconus cornea, unamplified, (od/oe) Homo 
(gb|CV569521.1|), blast E-value=0, identity=92.91%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1032, gnl|bosTau2|chr3 (17028938-17027904)
               

               
               1-1032, gnl|Hg17|chr1 (147257591-147258631)
               

               
               1-1032, gnl|Mm7|chr3 (95638889-95637879)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1032, gnl|bosTau2|chr3 (17028938-17027904)
               

               
               1-1032, gnl|Hg17|chr1 (147257591-147258631)
               

               
               1-1032, gnl|Mm7|chr3 (95638889-95637879)

	157-276, - strand, RNAz p=0.678124
	437-990, + strand, RNAz p=0.986054

	726-697, BX110499 Soares placenta Nb2HP Homo sapiens cDNA clone (emb\|BX110499.1\|), blast E-value=0, identity=94.15%
	726-485, AGENCOURT_6688325 NIH_MGC_121 Homo sapiens cDNA clone IMAGE (gb\|BM927276.1\|), blast E-value=4e-17, identity=100%
	726-990, AGENCOURT_10333251 NIH_MGC_40 Homo sapiens cDNA clone IMAGE (gb\|BU552454.1\|), blast E-value=0, identity=93.96%
	727-697, 4082686 BARC 9BOV Bos taurus cDNA clone 9BOV20_N23 5', mRNA (gb\|CK967299.1\|), blast E-value=0, identity=94.79%
	726-697, 17000600024111 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb\|CN401181.1\|), blast E-value=0, identity=94.09%
	726-697, od06d10.y1 Human keratoconus cornea, unamplified, (od/oe) Homo (gb\|CV569521.1\|), blast E-value=0, identity=92.91%

	1-1032, gnl\|bosTau2\|chr3 (17028938-17027904)
	1-1032, gnl\|Hg17\|chr1 (147257591-147258631)
	1-1032, gnl\|Mm7\|chr3 (95638889-95637879)