Ss1.1-Fat1-PT7B2.5
|
TCTGCACAGGTACCAGGAGCTCCTGGATACCAACCAGAGTCCTTTCTTCTTGTTCACGTG
TGCCATGCGGTGGCTGGCAGTGCGGCTGGACCTGATCAGCATTGCCCTGATCACCACCAC
CGGGCTGATGATTGTTCTCATGCACGGGAAGATTCCCCCAGCCTACGCGGGGCTTGCCAT
CTCCTACGCAGTCCAGTTAACAGGGCTGTTCCAGTTTACTGTCCGGCTGGCATCCGAGAC
AGAAGCTCGCTTCACCTCAGTGGAGAGGATCAACCACTACATCAAGACTCTCTCTTTGGA
AGCACCTGCCAGAATTAAGATCAAGGCTCCCTCCTCTGACTGGCCCCAGGAAGGAGAGGT
GACCTTTGAGAATGCAGAGATGAGGTACCAAGAAAATCTCCCCCTGGTTCTGAAGAAAGT
GTCCTTCACCATCAAACCCAAGGAGAAGATTGGCATCGTGGGACGGACGGGATCGGGTAA
GGATCTCTTCTCTGGAGGACAGTTGAACCTACCAGAGTCAAGTTTGGCCCATGATTTGCT
------------CTCTAATCCCTTCAAACCAGATTCTGGTTAGATGAGCAATTCGTGTCT
CAGGTCTCTGAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTGCACAGGTACCAGGAGCTCCTGGATACCAACCAGAGTCCTTTCTTCTTGTTCACGTG
TGCCATGCGGTGGCTGGCAGTGCGGCTGGACCTGATCAGCATTGCCCTGATCACCACCAC
CGGGCTGATGATTGTTCTCATGCACGGGAAGATTCCCCCAGCCTACGCGGGGCTTGCCAT
CTCCTACGCAGTCCAGTTAACAGGGCTGTTCCAGTTTACTGTCCGGCTGGCATCCGAGAC
AGAAGCTCGCTTCACCTCAGTGGAGAGGATCAACCACTACATCAAGACTCTCTCTTTGGA
AGCACCTGCCAGAATTAAGATCAAGGCTCCCTCCTCTGACTGGCCCCAGGAAGGAGAGGT
GACCTTTGAGAATGCAGAGATGAGGTACCAAGAAAATCTCCCCCTGGTTCTGAAGAAAGT
GTCCTTCACCATCAAACCCAAGGAGAAGATTGGCATCGTGGGACGGACGGGATCGGGTAA
GGATCTCTTCTCTGGAGGACAGTTGAACCTACCAGAGTCAAGTTTGGCCCATGATTTGCT
------------CTCTAATCCCTTCAAACCAGATTCTGGTTAGATGAGCAATTCGTGTCT
CAGGTCTCTGAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
5-196, gnl|bosTau2|chr1 (51590567-51590376) |
|
5-196, gnl|canFam2|chr34 (19889979-19890210) |
|
5-196, gnl|danRer3|chr18 (34811045-34810827) |
|
5-196, gnl|dasNov1|scaffold_3955 (75975-75745) |
|
5-196, gnl|echTel1|scaffold_311174 (60369-60157) |
|
5-196, gnl|fr1|chrUn (70771011-70771236) |
|
5-196, gnl|galGal2|chr9 (15082416-15082629) |
|
5-196, gnl|hg17|chr3 (185147809-185148038) |
|
5-196, gnl|Hg17|chr3 (185148005-185147814) |
|
5-196, gnl|mm7|chr16 (19913992-19914220) |
|
5-196, gnl|Mm7|chr16 (19914187-19913996) |
|
5-196, gnl|monDom2|scaffold_167 (1273817-1274040) |
|
5-196, gnl|oryCun1|scaffold_193319 (43492-43261) |
|
5-196, gnl|panTro1|chr2 (189094433-189094662) |
|
5-196, gnl|rheMac2|chr2 (102728201-102727972) |
|
5-196, gnl|rn3|chr11 (82845091-82844859) |
|
5-196, gnl|tetNig1|chr1 (4882771-4882980) |
|
5-196, gnl|xenTro1|scaffold_1143 (148791-148560) |
| |
|
285-600, gnl|bosTau2|chr1 (51586709-51586376) |
|
285-600, gnl|Hg17|chr3 (185143408-185143091) |
|
285-600, gnl|Mm7|chr16 (19907581-19907248) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-196, gnl|bosTau2|chr1 (51590567-51590376) |
|
5-196, gnl|canFam2|chr34 (19889979-19890210) |
|
5-196, gnl|danRer3|chr18 (34811045-34810827) |
|
5-196, gnl|dasNov1|scaffold_3955 (75975-75745) |
|
5-196, gnl|echTel1|scaffold_311174 (60369-60157) |
|
5-196, gnl|fr1|chrUn (70771011-70771236) |
|
5-196, gnl|galGal2|chr9 (15082416-15082629) |
|
5-196, gnl|hg17|chr3 (185147809-185148038) |
|
5-196, gnl|Hg17|chr3 (185148005-185147814) |
|
5-196, gnl|mm7|chr16 (19913992-19914220) |
|
5-196, gnl|Mm7|chr16 (19914187-19913996) |
|
5-196, gnl|monDom2|scaffold_167 (1273817-1274040) |
|
5-196, gnl|oryCun1|scaffold_193319 (43492-43261) |
|
5-196, gnl|panTro1|chr2 (189094433-189094662) |
|
5-196, gnl|rheMac2|chr2 (102728201-102727972) |
|
5-196, gnl|rn3|chr11 (82845091-82844859) |
|
5-196, gnl|tetNig1|chr1 (4882771-4882980) |
|
5-196, gnl|xenTro1|scaffold_1143 (148791-148560) |
| |
|
285-600, gnl|bosTau2|chr1 (51586709-51586376) |
|
285-600, gnl|Hg17|chr3 (185143408-185143091) |
|
285-600, gnl|Mm7|chr16 (19907581-19907248) |
