Non-Coding RNA Search

Ss1.1-Fet1-UMC-pd20fet-014-b09.3

Sequence:


               
               GAAACTGAATCTGCACTGGCAGAAATAATTGCTGAAACTGAAGTTCCAACACTTAATAAA
TGTCCAACAAAGTACCCCAAAACAAAAAAGGTATGATTCTTAACAAATGTAAGAATCATT
TTCTAACAAGTGTCTTAGAATATTAACTAGATTTTTAAGACATGAGTATAATTTATAACA
TCCCATAAGGGACAGAAATATGAATCATAATTTTTATACTTGCAAAGTTTTAAACTGAGA
ATGAGAATTATAAAACTGTAAAATCAGTTAACCTAAGTGTTTGCATTATTAAAACATATT
AAAATAGTTAATATCAAGACTTCCTTTTAGTATTGCAATGCATGATTTCTTTGGTTTTGC
CTATCCTATGTACTAAATTACACTTCTCAGAAATAGCTGGTTTTAATTAGACATAGTATC
TTTATTCTTTGGTTTTTTTTTAAAATAAATTCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACTGAATCTGCACTGGCAGAAATAATTGCTGAAACTGAAGTTCCAACACTTAATAAA
TGTCCAACAAAGTACCCCAAAACAAAAAAGGTATGATTCTTAACAAATGTAAGAATCATT
TTCTAACAAGTGTCTTAGAATATTAACTAGATTTTTAAGACATGAGTATAATTTATAACA
TCCCATAAGGGACAGAAATATGAATCATAATTTTTATACTTGCAAAGTTTTAAACTGAGA
ATGAGAATTATAAAACTGTAAAATCAGTTAACCTAAGTGTTTGCATTATTAAAACATATT
AAAATAGTTAATATCAAGACTTCCTTTTAGTATTGCAATGCATGATTTCTTTGGTTTTGC
CTATCCTATGTACTAAATTACACTTCTCAGAAATAGCTGGTTTTAATTAGACATAGTATC
TTTATTCTTTGGTTTTTTTTTAAAATAAATTCCTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-118, - strand, RNAz p=0.510756

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.510756

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-124, gnl|bosTau2|chr4 (22258515-22258639)
               

               
               1-124, gnl|canFam2|chr18 (18240745-18240629)
               

               
               1-124, gnl|danRer3|chr4 (28515314-28515445)
               

               
               1-124, gnl|dasNov1|scaffold_94565 (4562-4678)
               

               
               1-124, gnl|fr1|chrUn (273373192-273373049)
               

               
               1-124, gnl|galGal2|chr1 (9886183-9886067)
               

               
               1-124, gnl|hg17|chr7 (104336486-104336602)
               

               
               1-124, gnl|Hg17|chr7 (104336503-104336620)
               

               
               1-124, gnl|mm7|chr5 (22533894-22534010)
               

               
               1-124, gnl|Mm7|chr5 (22533911-22534022)
               

               
               1-124, gnl|monDom2|scaffold_30 (31347325-31347441)
               

               
               1-124, gnl|oryCun1|scaffold_137492 (9011-8895)
               

               
               1-124, gnl|panTro1|chr6 (106171388-106171504)
               

               
               1-124, gnl|rheMac2|chr3 (142504425-142504541)
               

               
               1-124, gnl|rn3|chr4 (7052665-7052549)
               

               
               1-124, gnl|xenTro1|scaffold_61 (2462181-2462300)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-124, gnl|bosTau2|chr4 (22258515-22258639)
               

               
               1-124, gnl|canFam2|chr18 (18240745-18240629)
               

               
               1-124, gnl|danRer3|chr4 (28515314-28515445)
               

               
               1-124, gnl|dasNov1|scaffold_94565 (4562-4678)
               

               
               1-124, gnl|fr1|chrUn (273373192-273373049)
               

               
               1-124, gnl|galGal2|chr1 (9886183-9886067)
               

               
               1-124, gnl|hg17|chr7 (104336486-104336602)
               

               
               1-124, gnl|Hg17|chr7 (104336503-104336620)
               

               
               1-124, gnl|mm7|chr5 (22533894-22534010)
               

               
               1-124, gnl|Mm7|chr5 (22533911-22534022)
               

               
               1-124, gnl|monDom2|scaffold_30 (31347325-31347441)
               

               
               1-124, gnl|oryCun1|scaffold_137492 (9011-8895)
               

               
               1-124, gnl|panTro1|chr6 (106171388-106171504)
               

               
               1-124, gnl|rheMac2|chr3 (142504425-142504541)
               

               
               1-124, gnl|rn3|chr4 (7052665-7052549)
               

               
               1-124, gnl|xenTro1|scaffold_61 (2462181-2462300)

	1-124, gnl\|bosTau2\|chr4 (22258515-22258639)
	1-124, gnl\|canFam2\|chr18 (18240745-18240629)
	1-124, gnl\|danRer3\|chr4 (28515314-28515445)
	1-124, gnl\|dasNov1\|scaffold_94565 (4562-4678)
	1-124, gnl\|fr1\|chrUn (273373192-273373049)
	1-124, gnl\|galGal2\|chr1 (9886183-9886067)
	1-124, gnl\|hg17\|chr7 (104336486-104336602)
	1-124, gnl\|Hg17\|chr7 (104336503-104336620)
	1-124, gnl\|mm7\|chr5 (22533894-22534010)
	1-124, gnl\|Mm7\|chr5 (22533911-22534022)
	1-124, gnl\|monDom2\|scaffold_30 (31347325-31347441)
	1-124, gnl\|oryCun1\|scaffold_137492 (9011-8895)
	1-124, gnl\|panTro1\|chr6 (106171388-106171504)
	1-124, gnl\|rheMac2\|chr3 (142504425-142504541)
	1-124, gnl\|rn3\|chr4 (7052665-7052549)
	1-124, gnl\|xenTro1\|scaffold_61 (2462181-2462300)