Non-Coding RNA Search

Ss1.1-Liv1-LVR010001G06.5

Sequence:


               
               CTGGCCGTGACTCACTAGACGGGCGCGCGTCCTGGTCTTCCGCGGGGCCGCTGTTTCTCG
GGGCCCCCGGCACCCGCCGAAGGCGGCGCCCGGAACTGGGGCGCTTTTTCTCGGGGCGGT
AGCCAGCCGAGGCCACCCGGCCTTGGCAGGCGGAGGGAAGGGTCAGCAGGCTGCCTGGGC
ACTCGCCTCTGCGACCCTGGCTGGAACGCAGGGCCCCATCATGGCGGCGCCGACCCAGCA
GCCACAGGTATCTGTGACCTTCGATGATGTAGCTGTGACTTTTACCCAGGAGGAGTGGGC
ACAGCTGGACCCAGCTCAAAGGACCCTATACCAAGAGGTGATGCTGGAAAACTTTAGGCT
CCTGGTGTCTCTGGGCGAAAGATACAGATTAGAAGGGGGCCTGGAGGTATTCCAACCGCG
AAGCTTCCGTGTCTTCAGCAGCTCCTTACCTCCCAGGATCGATGTGTGGCCGTCTGTGCC
CGAAGAGTCATCAACCAGGGAAATTCAGCAGAGCCTCGGTGACAGAGGGAAACCCAAGAC
CAGAGAACCTAGCCCTTGGGAGCCAGCCGTCTCTGAGGGAGCCTCCCTCCGGGAACCAAC
ACAAGGAGGCCTAGGGGACCCCCAGTCGGGACGAACCAAGAATCAGGGTGAGCCATCGGT
AGTGCAGGAAGGGCCCTTTGGACGAGGGATAGCCTCCCAGAGGGGAAAGCTTCCTGGGAA
AGTGAGTCCTGAACATGGCCGCTCAGGGACAGCTGATGGTGTGTGTTCACGGGGTGTGCA
GGAGCCCTTCCCTCCAGGAGGAGCTGTCCCTGACCGCGACTCAGGTGGATCGGGTAAAGA
TGCCATGATCCAGGAAGAGGAAAATATCTTTAAGTGCAACGAATGCGGGAAAGTGTTTAA
CAAGAAACACCTTCTTGCTGGGCATGAAAAGATTCACTCTGGGGTGAAGCCGTATGAATG
CACGGAGTGTGGGAAAACGTTTATTAAGAGCACATACCTGCTCCAGCACCACATGATCCA
CACTGGGGAGAGGCCCTACGAGTGCATGGAGTGCGGCAAGGCCTTCAGCCGCAAGTCCTA
CCTCACCCAGCACCAGCGGATCCACAGTGGAGAGAAGCCGTACAGGTGCAGTGAGTGCGG
AAAGGCCTTCACCCACCGCTCCAATTTTGTCTTACATAAGAGGAGACACACCGGGGAGAA
ATCCTTCGTGTGCAAAGAATGTGGGCAGGTGTTCCGACATAGGCCCGGATTCCTTCGACA
TCACATCGTCCACAGCGGCGAGAATCCGTACGAGTGCTTTGAGTGTGGCAAGGTCTTCAA
ACACAAGTCATACCTCGTGTGGCACCAGCAGACACACACCGGGGAGAAGCCCTATGAGTG
CAGCGAGTGCGGCAAGGCCTTCTGTGAGAGCGCCGCCCTCATTCACCACTACGTCATCCA
CACTGGGGAGAAGCCCTTCGAGTGCCTCGAGTGCGGGAAGGCCTTCAACCACAGGTCCTA
CCTCAAGAGGCACCAGCGGATTCACACTGGGGAGAAGCCCTATGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCGTGACTCACTAGACGGGCGCGCGTCCTGGTCTTCCGCGGGGCCGCTGTTTCTCG
GGGCCCCCGGCACCCGCCGAAGGCGGCGCCCGGAACTGGGGCGCTTTTTCTCGGGGCGGT
AGCCAGCCGAGGCCACCCGGCCTTGGCAGGCGGAGGGAAGGGTCAGCAGGCTGCCTGGGC
ACTCGCCTCTGCGACCCTGGCTGGAACGCAGGGCCCCATCATGGCGGCGCCGACCCAGCA
GCCACAGGTATCTGTGACCTTCGATGATGTAGCTGTGACTTTTACCCAGGAGGAGTGGGC
ACAGCTGGACCCAGCTCAAAGGACCCTATACCAAGAGGTGATGCTGGAAAACTTTAGGCT
CCTGGTGTCTCTGGGCGAAAGATACAGATTAGAAGGGGGCCTGGAGGTATTCCAACCGCG
AAGCTTCCGTGTCTTCAGCAGCTCCTTACCTCCCAGGATCGATGTGTGGCCGTCTGTGCC
CGAAGAGTCATCAACCAGGGAAATTCAGCAGAGCCTCGGTGACAGAGGGAAACCCAAGAC
CAGAGAACCTAGCCCTTGGGAGCCAGCCGTCTCTGAGGGAGCCTCCCTCCGGGAACCAAC
ACAAGGAGGCCTAGGGGACCCCCAGTCGGGACGAACCAAGAATCAGGGTGAGCCATCGGT
AGTGCAGGAAGGGCCCTTTGGACGAGGGATAGCCTCCCAGAGGGGAAAGCTTCCTGGGAA
AGTGAGTCCTGAACATGGCCGCTCAGGGACAGCTGATGGTGTGTGTTCACGGGGTGTGCA
GGAGCCCTTCCCTCCAGGAGGAGCTGTCCCTGACCGCGACTCAGGTGGATCGGGTAAAGA
TGCCATGATCCAGGAAGAGGAAAATATCTTTAAGTGCAACGAATGCGGGAAAGTGTTTAA
CAAGAAACACCTTCTTGCTGGGCATGAAAAGATTCACTCTGGGGTGAAGCCGTATGAATG
CACGGAGTGTGGGAAAACGTTTATTAAGAGCACATACCTGCTCCAGCACCACATGATCCA
CACTGGGGAGAGGCCCTACGAGTGCATGGAGTGCGGCAAGGCCTTCAGCCGCAAGTCCTA
CCTCACCCAGCACCAGCGGATCCACAGTGGAGAGAAGCCGTACAGGTGCAGTGAGTGCGG
AAAGGCCTTCACCCACCGCTCCAATTTTGTCTTACATAAGAGGAGACACACCGGGGAGAA
ATCCTTCGTGTGCAAAGAATGTGGGCAGGTGTTCCGACATAGGCCCGGATTCCTTCGACA
TCACATCGTCCACAGCGGCGAGAATCCGTACGAGTGCTTTGAGTGTGGCAAGGTCTTCAA
ACACAAGTCATACCTCGTGTGGCACCAGCAGACACACACCGGGGAGAAGCCCTATGAGTG
CAGCGAGTGCGGCAAGGCCTTCTGTGAGAGCGCCGCCCTCATTCACCACTACGTCATCCA
CACTGGGGAGAAGCCCTTCGAGTGCCTCGAGTGCGGGAAGGCCTTCAACCACAGGTCCTA
CCTCAAGAGGCACCAGCGGATTCACACTGGGGAGAAGCCCTATGTGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55649987|ref|XP_512928.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55649987|ref|XP_512928.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1047-1215, - strand, RNAz p=0.989938

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1047-1215, - strand, RNAz p=0.989938

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               244-375, gnl|bosTau2|chr13 (24158258-24158389)
               

               
               244-375, gnl|Hg17|chr20 (18234321-18234452)
               

               
               244-375, gnl|Mm7|chr13 (47981729-47981598)
               


               
               381-520, gnl|bosTau2|chr18 (56126912-56127051)
               

               
               381-520, gnl|Hg17|chr19 (62455607-62455758)
               


               
               857-1548, gnl|bosTau2|chr13 (24162819-24163510)
               

               
               857-1548, gnl|Hg17|chr20 (18244543-18245234)
               


               
               858-1542, gnl|bosTau2|chr10 (8996850-8996164)
               

               
               858-1542, gnl|Hg17|chr19 (42818655-42817885)
               

               
               858-1542, gnl|Mm7|chr2 (127310281-127309672)
               


               
               967-1541, gnl|bosTau2|chr10 (21939223-21938652)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               244-375, gnl|bosTau2|chr13 (24158258-24158389)
               

               
               244-375, gnl|Hg17|chr20 (18234321-18234452)
               

               
               244-375, gnl|Mm7|chr13 (47981729-47981598)
               


               
               381-520, gnl|bosTau2|chr18 (56126912-56127051)
               

               
               381-520, gnl|Hg17|chr19 (62455607-62455758)
               


               
               857-1548, gnl|bosTau2|chr13 (24162819-24163510)
               

               
               857-1548, gnl|Hg17|chr20 (18244543-18245234)
               


               
               858-1542, gnl|bosTau2|chr10 (8996850-8996164)
               

               
               858-1542, gnl|Hg17|chr19 (42818655-42817885)
               

               
               858-1542, gnl|Mm7|chr2 (127310281-127309672)
               


               
               967-1541, gnl|bosTau2|chr10 (21939223-21938652)

	244-375, gnl\|bosTau2\|chr13 (24158258-24158389)
	244-375, gnl\|Hg17\|chr20 (18234321-18234452)
	244-375, gnl\|Mm7\|chr13 (47981729-47981598)

	381-520, gnl\|bosTau2\|chr18 (56126912-56127051)
	381-520, gnl\|Hg17\|chr19 (62455607-62455758)

	857-1548, gnl\|bosTau2\|chr13 (24162819-24163510)
	857-1548, gnl\|Hg17\|chr20 (18244543-18245234)

	858-1542, gnl\|bosTau2\|chr10 (8996850-8996164)
	858-1542, gnl\|Hg17\|chr19 (42818655-42817885)
	858-1542, gnl\|Mm7\|chr2 (127310281-127309672)

	967-1541, gnl\|bosTau2\|chr10 (21939223-21938652)