Non-Coding RNA Search

Ss1.1-Liv1-LVR010004B09.5

Sequence:


               
               GTGAGATCTTGTTTATGCTGGGAGCTTCTCACGATGGACTCAAAAGTCCCAAAGGTGGCT
TGCAGAGACTGTACCTTCTGCTCGACGCCCTGCAAGCCCTGACCCAGCTCCTCCCTCTGC
CGGGAGAAGTCCTGGTGGCTGCGCCGGACCTGCTGGACCTCCTCCAGGACGTGGTGGACA
CACCAGCCCGAGAAGGCGGCCGCCGCCACCAGCGCGAGGTAGAAGAGAAAGTTGAGCGCC
CGGCCGAGCCTGCGCGAGCAGGACGCCGAGGACGAGGCGGCAGCAGCTGCGGCGGCGGCG
GCAGCGGAGGAGGACTTGCCGCCGCGGTGGCCGCCCCTACCGTGCGCCTGGTTCTGCGGA
TGCTGCGGCGGGTGCTGCTGCGGGTGCGGCGCGGGCGGCGCCGGCTGCTGCGGCGCCGGC
GGCGGCTTCTTCGCCACGTCATCCGCGCCGCCCGACGGGTGGGCGCCCTTCTCCGAGGGG
CTCGCGGCGCCGTGGCCGCCCTTGGAGCCCCTTTGTTTGGCCGAGGGCATGGCGGGCGCG
GCGGCGGGTGAGGCCGCGGGCTACGAGGCGAGCGAGCGGGGCGCGCGGCCCGGGAAACTT
CCTCGGGCTCCCCCGGGGCTGGGCGAGCGGCACGCGGGCGCTGCTGGCGTCGGAGCGGCC
GCGAGAGAGAGCGAGAGAGAGAGCGAGAGAGCGAGAGCGGGCGGGCGGGCGAGGAAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGATCTTGTTTATGCTGGGAGCTTCTCACGATGGACTCAAAAGTCCCAAAGGTGGCT
TGCAGAGACTGTACCTTCTGCTCGACGCCCTGCAAGCCCTGACCCAGCTCCTCCCTCTGC
CGGGAGAAGTCCTGGTGGCTGCGCCGGACCTGCTGGACCTCCTCCAGGACGTGGTGGACA
CACCAGCCCGAGAAGGCGGCCGCCGCCACCAGCGCGAGGTAGAAGAGAAAGTTGAGCGCC
CGGCCGAGCCTGCGCGAGCAGGACGCCGAGGACGAGGCGGCAGCAGCTGCGGCGGCGGCG
GCAGCGGAGGAGGACTTGCCGCCGCGGTGGCCGCCCCTACCGTGCGCCTGGTTCTGCGGA
TGCTGCGGCGGGTGCTGCTGCGGGTGCGGCGCGGGCGGCGCCGGCTGCTGCGGCGCCGGC
GGCGGCTTCTTCGCCACGTCATCCGCGCCGCCCGACGGGTGGGCGCCCTTCTCCGAGGGG
CTCGCGGCGCCGTGGCCGCCCTTGGAGCCCCTTTGTTTGGCCGAGGGCATGGCGGGCGCG
GCGGCGGGTGAGGCCGCGGGCTACGAGGCGAGCGAGCGGGGCGCGCGGCCCGGGAAACTT
CCTCGGGCTCCCCCGGGGCTGGGCGAGCGGCACGCGGGCGCTGCTGGCGTCGGAGCGGCC
GCGAGAGAGAGCGAGAGAGAGAGCGAGAGAGCGAGAGCGGGCGGGCGGGCGAGGAAAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               112-231, - strand, RNAz p=0.623023

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-231, - strand, RNAz p=0.623023

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               73-719, gnl|bosTau2|chr5 (42113365-42114007)
               

               
               73-719, gnl|Hg17|chr12 (105143612-105144267)
               

               
               73-719, gnl|Mm7|chr10 (84074809-84075384)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-719, gnl|bosTau2|chr5 (42113365-42114007)
               

               
               73-719, gnl|Hg17|chr12 (105143612-105144267)
               

               
               73-719, gnl|Mm7|chr10 (84074809-84075384)

	73-719, gnl\|bosTau2\|chr5 (42113365-42114007)
	73-719, gnl\|Hg17\|chr12 (105143612-105144267)
	73-719, gnl\|Mm7\|chr10 (84074809-84075384)