Non-Coding RNA Search

Ss1.1-Liv1-LVR010005F08.5

Sequence:


               
               TTACATATGCAATGAGTGTGGCCCTAAACAAAAAAAAAGAAAAAAGTTTCCTACCCTGCA
TACATACTTAACTATATATAACTGAAACAAAAATATCACAATACTATACTGATGTACAAT
CCATTCTGATATTTTCTTTTCAATTCCTTCCCTGTTCATACGTATACATTTCGGTCATAA
TCCATGAGATTAATTTCATGGCCCTCTGATCGATCATAACCTGTACTTGAAAAAGCCCTG
CTTGGTGTCACCTTGCCAGAACTTTTCCGTAACACTATTTTATGCAACTGTTACCCTGTC
CGGGATGACTGGTGTAAATACCCTCTTTTACCGAAAAGGTCACAGGCTCCTTGAGATGCG
CTGTCCAAGTTCACAATCAGGTGACCATTGCCCTGAGATCCAGCTGAAGCTCTGGGCAGA
GCCGGATTCTCCCCGGGTGACAAACGCCACAGCCCTTCCGGAGGACCAGGACACTGAAGA
GGGGCAGTGGGAGGAAGAGCAGTCCGTACAAAATGCCTCAGATCCACCCTCTTCCAGGTG
ATTGGTCCCAGGGGGTTCCCAGCCCCCACCCCATTCTGGGGCCAGCTTCTCCCGGCAGGA
CCGCCCCCAAACCAGGCCCTCTGGAGCAGTTCTTCCCTGCTTGCTCCAGTGGGTGTGGCT
TCTGACAGATGGCCTGGAACTGCTTTGTCCCAGTCACCCAGAAAGGGTCCCTGGCTCTGA
GCTGAGAAGATTCTTGGCAGGCTCTCCCACTAGCTTCTTGACATGGCTCTCCAGGAAGGA
ATCAGGTGAGCGGAGACACTGCCGGTGTCAGGGGAAGAGGGGATGGGACAGCTGACCTGA
GAGAAGTCCAGCCTGGTGGCCAGAACTGTCAAGGAGGAGACACCAAGGCTGGCCTGCTGA
GAACCAGCTGAGCCACAGAGGTCTTGGGAGAAGGTGACGGGGGGACATCGCCCATCCATG
GGAGGCTGGTGGGGTGGGTTAAGACCGCATCCTGGGAGGACTTGCAGCCTGTGAAGAGTT
CGGCAAGACCTCTTGCTGCCTTGAACTCTGAGCCCCCTTGGTTACCCAGAGATCAGAAAC
TTTGGGCTGCATCTTCCCCTGGAACTGAGCGCTCTCTGTCCCACAGGGGGTCACTGTCCA
AGGCTGCAGACTTGTTCCCATTTAGGAACGAATGACTGGTCTTTAACCCCTTCCTGAAAG
TGAGGAGGATACAGGAGCAAGGTGTGAGGTGGGCTTGAGAAGGGACCACCTTCTGCAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACATATGCAATGAGTGTGGCCCTAAACAAAAAAAAAGAAAAAAGTTTCCTACCCTGCA
TACATACTTAACTATATATAACTGAAACAAAAATATCACAATACTATACTGATGTACAAT
CCATTCTGATATTTTCTTTTCAATTCCTTCCCTGTTCATACGTATACATTTCGGTCATAA
TCCATGAGATTAATTTCATGGCCCTCTGATCGATCATAACCTGTACTTGAAAAAGCCCTG
CTTGGTGTCACCTTGCCAGAACTTTTCCGTAACACTATTTTATGCAACTGTTACCCTGTC
CGGGATGACTGGTGTAAATACCCTCTTTTACCGAAAAGGTCACAGGCTCCTTGAGATGCG
CTGTCCAAGTTCACAATCAGGTGACCATTGCCCTGAGATCCAGCTGAAGCTCTGGGCAGA
GCCGGATTCTCCCCGGGTGACAAACGCCACAGCCCTTCCGGAGGACCAGGACACTGAAGA
GGGGCAGTGGGAGGAAGAGCAGTCCGTACAAAATGCCTCAGATCCACCCTCTTCCAGGTG
ATTGGTCCCAGGGGGTTCCCAGCCCCCACCCCATTCTGGGGCCAGCTTCTCCCGGCAGGA
CCGCCCCCAAACCAGGCCCTCTGGAGCAGTTCTTCCCTGCTTGCTCCAGTGGGTGTGGCT
TCTGACAGATGGCCTGGAACTGCTTTGTCCCAGTCACCCAGAAAGGGTCCCTGGCTCTGA
GCTGAGAAGATTCTTGGCAGGCTCTCCCACTAGCTTCTTGACATGGCTCTCCAGGAAGGA
ATCAGGTGAGCGGAGACACTGCCGGTGTCAGGGGAAGAGGGGATGGGACAGCTGACCTGA
GAGAAGTCCAGCCTGGTGGCCAGAACTGTCAAGGAGGAGACACCAAGGCTGGCCTGCTGA
GAACCAGCTGAGCCACAGAGGTCTTGGGAGAAGGTGACGGGGGGACATCGCCCATCCATG
GGAGGCTGGTGGGGTGGGTTAAGACCGCATCCTGGGAGGACTTGCAGCCTGTGAAGAGTT
CGGCAAGACCTCTTGCTGCCTTGAACTCTGAGCCCCCTTGGTTACCCAGAGATCAGAAAC
TTTGGGCTGCATCTTCCCCTGGAACTGAGCGCTCTCTGTCCCACAGGGGGTCACTGTCCA
AGGCTGCAGACTTGTTCCCATTTAGGAACGAATGACTGGTCTTTAACCCCTTCCTGAAAG
TGAGGAGGATACAGGAGCAAGGTGTGAGGTGGGCTTGAGAAGGGACCACCTTCTGCAGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               729-924, + strand, RNAz p=0.992503

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               729-924, + strand, RNAz p=0.992503

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               46-452, gnl|bosTau2|chr2 (71827943-71827560)
               

               
               46-452, gnl|Hg17|chr1 (33456558-33456151)
               


               
               619-1260, gnl|bosTau2|chr2 (71827406-71826759)
               

               
               619-1260, gnl|Hg17|chr1 (33455944-33455271)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-452, gnl|bosTau2|chr2 (71827943-71827560)
               

               
               46-452, gnl|Hg17|chr1 (33456558-33456151)
               


               
               619-1260, gnl|bosTau2|chr2 (71827406-71826759)
               

               
               619-1260, gnl|Hg17|chr1 (33455944-33455271)

	46-452, gnl\|bosTau2\|chr2 (71827943-71827560)
	46-452, gnl\|Hg17\|chr1 (33456558-33456151)

	619-1260, gnl\|bosTau2\|chr2 (71827406-71826759)
	619-1260, gnl\|Hg17\|chr1 (33455944-33455271)