Non-Coding RNA Search

Ss1.1-Liv1-LVR010009A06.5

Sequence:


               
               ATTATGCCAATTGCCATTTCTCCTTGAAAAGGAGGGCAGGGACCAGTGACAGACTTGCAT
GAGGGGACTGCTAAAAGCCAAGTAGGCACACTGTAGAGTCCAGTGCTAATGTCCAGAGGT
CTAAGCCTACACTTTCTTTTAATGCTTTATCAGTGCCAGTAAAGAAGAAGGAACAAAGGT
GTGAAAATGATGCACCTTTGAAGAAACCACCAAGTCCTGCCCCTGCAAGCCGATCCATGT
GCTATGTTGTTGAATAATCCTCTCAAAATGAGAAAAAGCCGGCAGATCTCTTTCAAATTG
TTAGCTTCCTAGTTCTCTACACTCTAGCCCATTTCAACTAGGAGCTGCTTAATAAATGAC
TTCAAACTGCTCCATTAGTGCTTTTATAGTTGTTGGAGGAGTTGTTGATTGAGAAGGGAG
CAAGAATCAAGTTCTCTCCTCAATTCTCTATAAACAGGCTAGGAAACCTAATTTCTTTAT
AAAGGCTAAAGCTGATCCACTGGATCAAGTTAGTCTTTCTTCCCCCAAATTGAGGATTGT
TTTGTAGGTTCAGTTTCTGGGGAGCCAGTCCACAGTGCAATGCCTGTGTGGAGTTGGTAT
TTGTGCAGGCAGCCTGTGTGCTTGGAGGCACTCTGTGTTCAAGCTATGTGTGTTGAATAC
TGCCCGAACCATCTCCTGACCCAAGCATCATAAGACTGATGCTGTAGAATAGAATACATT
TGTACACAAATAGTGTGTGCAAACAGTCTTTGTACATAGAAAAGACCTATTGTGGCAGAT
GGAGGATAAATTATTCAACTGACGGTGCAAAAACATTTCTTGCAAAGAAAAGTAAAGTGT
ATAGTATTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTATGCCAATTGCCATTTCTCCTTGAAAAGGAGGGCAGGGACCAGTGACAGACTTGCAT
GAGGGGACTGCTAAAAGCCAAGTAGGCACACTGTAGAGTCCAGTGCTAATGTCCAGAGGT
CTAAGCCTACACTTTCTTTTAATGCTTTATCAGTGCCAGTAAAGAAGAAGGAACAAAGGT
GTGAAAATGATGCACCTTTGAAGAAACCACCAAGTCCTGCCCCTGCAAGCCGATCCATGT
GCTATGTTGTTGAATAATCCTCTCAAAATGAGAAAAAGCCGGCAGATCTCTTTCAAATTG
TTAGCTTCCTAGTTCTCTACACTCTAGCCCATTTCAACTAGGAGCTGCTTAATAAATGAC
TTCAAACTGCTCCATTAGTGCTTTTATAGTTGTTGGAGGAGTTGTTGATTGAGAAGGGAG
CAAGAATCAAGTTCTCTCCTCAATTCTCTATAAACAGGCTAGGAAACCTAATTTCTTTAT
AAAGGCTAAAGCTGATCCACTGGATCAAGTTAGTCTTTCTTCCCCCAAATTGAGGATTGT
TTTGTAGGTTCAGTTTCTGGGGAGCCAGTCCACAGTGCAATGCCTGTGTGGAGTTGGTAT
TTGTGCAGGCAGCCTGTGTGCTTGGAGGCACTCTGTGTTCAAGCTATGTGTGTTGAATAC
TGCCCGAACCATCTCCTGACCCAAGCATCATAAGACTGATGCTGTAGAATAGAATACATT
TGTACACAAATAGTGTGTGCAAACAGTCTTTGTACATAGAAAAGACCTATTGTGGCAGAT
GGAGGATAAATTATTCAACTGACGGTGCAAAAACATTTCTTGCAAAGAAAAGTAAAGTGT
ATAGTATTTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               644-802, + strand, RNAz p=0.980805

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               644-802, + strand, RNAz p=0.980805

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_021813, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021813, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-293, gnl|bosTau2|chr9 (33162826-33163120)
               

               
               3-293, gnl|Hg17|chr6 (90695070-90694765)
               

               
               3-293, gnl|Mm7|chr4 (32862473-32862726)
               


               
               305-852, gnl|bosTau2|chr9 (33163415-33163966)
               

               
               305-852, gnl|Hg17|chr6 (90694749-90694195)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-293, gnl|bosTau2|chr9 (33162826-33163120)
               

               
               3-293, gnl|Hg17|chr6 (90695070-90694765)
               

               
               3-293, gnl|Mm7|chr4 (32862473-32862726)
               


               
               305-852, gnl|bosTau2|chr9 (33163415-33163966)
               

               
               305-852, gnl|Hg17|chr6 (90694749-90694195)

	3-293, gnl\|bosTau2\|chr9 (33162826-33163120)
	3-293, gnl\|Hg17\|chr6 (90695070-90694765)
	3-293, gnl\|Mm7\|chr4 (32862473-32862726)

	305-852, gnl\|bosTau2\|chr9 (33163415-33163966)
	305-852, gnl\|Hg17\|chr6 (90694749-90694195)